Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_11420 and PS417_11425 are separated by 364 nucleotides PS417_11425 and PS417_11430 are separated by 186 nucleotides PS417_11430 and PS417_11435 are separated by 53 nucleotides
PS417_11420: PS417_11420 - potassium transporter KefB, at 2,457,052 to 2,458,860
_11420
PS417_11425: PS417_11425 - transcriptional regulator, at 2,459,225 to 2,459,530
_11425
PS417_11430: PS417_11430 - EamA, at 2,459,717 to 2,460,619
_11430
PS417_11435: PS417_11435 - asparagine synthase, at 2,460,673 to 2,462,577
_11435
Position (kb)
2459
2460
2461 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2458.754 kb on + strand at 2458.838 kb on - strand at 2458.903 kb on + strand at 2458.969 kb on + strand at 2459.009 kb on + strand at 2459.009 kb on + strand at 2459.010 kb on - strand at 2459.123 kb on + strand at 2459.123 kb on + strand at 2459.124 kb on - strand at 2459.124 kb on - strand at 2459.426 kb on + strand, within PS417_11425 at 2459.427 kb on - strand, within PS417_11425 at 2459.447 kb on + strand, within PS417_11425 at 2459.447 kb on + strand, within PS417_11425 at 2459.447 kb on + strand, within PS417_11425 at 2459.447 kb on + strand, within PS417_11425 at 2459.447 kb on + strand, within PS417_11425 at 2459.447 kb on + strand at 2459.719 kb on - strand at 2459.722 kb on + strand at 2459.722 kb on + strand at 2459.973 kb on + strand, within PS417_11430 at 2460.180 kb on - strand, within PS417_11430 at 2460.387 kb on + strand, within PS417_11430 at 2460.388 kb on - strand, within PS417_11430 at 2460.388 kb on - strand, within PS417_11430 at 2460.421 kb on + strand, within PS417_11430 at 2460.441 kb on + strand, within PS417_11430 at 2460.441 kb on + strand, within PS417_11430 at 2460.519 kb on - strand, within PS417_11430 at 2460.819 kb on + strand at 2461.215 kb on + strand, within PS417_11435 at 2461.247 kb on + strand, within PS417_11435 at 2461.247 kb on + strand, within PS417_11435 at 2461.247 kb on + strand, within PS417_11435 at 2461.427 kb on + strand, within PS417_11435 at 2461.427 kb on + strand, within PS417_11435 at 2461.428 kb on - strand, within PS417_11435 at 2461.428 kb on - strand, within PS417_11435 at 2461.428 kb on - strand, within PS417_11435 at 2461.495 kb on + strand, within PS417_11435 at 2461.524 kb on - strand at 2461.524 kb on - strand, within PS417_11435 at 2461.538 kb on + strand, within PS417_11435
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 2,458,754 + -0.0 2,458,838 - +0.1 2,458,903 + -0.9 2,458,969 + -2.4 2,459,009 + +0.1 2,459,009 + +0.5 2,459,010 - -0.7 2,459,123 + -0.1 2,459,123 + -1.1 2,459,124 - -0.1 2,459,124 - +1.9 2,459,426 + PS417_11425 0.66 -0.1 2,459,427 - PS417_11425 0.66 -1.4 2,459,447 + PS417_11425 0.73 -0.1 2,459,447 + PS417_11425 0.73 +0.0 2,459,447 + PS417_11425 0.73 -0.2 2,459,447 + PS417_11425 0.73 +0.7 2,459,447 + PS417_11425 0.73 -0.2 2,459,447 + +0.9 2,459,719 - +0.9 2,459,722 + +0.1 2,459,722 + +1.2 2,459,973 + PS417_11430 0.28 -0.9 2,460,180 - PS417_11430 0.51 +0.1 2,460,387 + PS417_11430 0.74 -1.0 2,460,388 - PS417_11430 0.74 -0.3 2,460,388 - PS417_11430 0.74 -0.0 2,460,421 + PS417_11430 0.78 -1.2 2,460,441 + PS417_11430 0.80 -0.6 2,460,441 + PS417_11430 0.80 -0.9 2,460,519 - PS417_11430 0.89 -0.6 2,460,819 + -0.5 2,461,215 + PS417_11435 0.28 -1.2 2,461,247 + PS417_11435 0.30 -0.5 2,461,247 + PS417_11435 0.30 +2.3 2,461,247 + PS417_11435 0.30 -0.0 2,461,427 + PS417_11435 0.40 -0.1 2,461,427 + PS417_11435 0.40 +0.3 2,461,428 - PS417_11435 0.40 +0.1 2,461,428 - PS417_11435 0.40 +0.0 2,461,428 - PS417_11435 0.40 +0.4 2,461,495 + PS417_11435 0.43 +1.9 2,461,524 - -0.7 2,461,524 - PS417_11435 0.45 +0.1 2,461,538 + PS417_11435 0.45 +0.2
Or see this region's nucleotide sequence