Strain Fitness in Pseudomonas simiae WCS417 around PS417_10915

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_10910 and PS417_10915 overlap by 4 nucleotidesPS417_10915 and PS417_10920 are separated by 146 nucleotides PS417_10910: PS417_10910 - FAD-dependent oxidoreductase, at 2,332,812 to 2,333,945 _10910 PS417_10915: PS417_10915 - ornithine cyclodeaminase, at 2,333,942 to 2,334,886 _10915 PS417_10920: PS417_10920 - LysR family transcriptional regulator, at 2,335,033 to 2,335,974 _10920 Position (kb) 2333 2334 2335Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2333.092 kb on + strand, within PS417_10910at 2333.093 kb on - strand, within PS417_10910at 2333.198 kb on - strand, within PS417_10910at 2333.394 kb on + strand, within PS417_10910at 2333.395 kb on - strand, within PS417_10910at 2333.533 kb on + strand, within PS417_10910at 2333.945 kb on + strandat 2333.945 kb on + strandat 2333.946 kb on - strandat 2333.946 kb on - strandat 2334.096 kb on + strandat 2334.096 kb on + strand, within PS417_10915at 2334.097 kb on - strand, within PS417_10915at 2334.286 kb on + strand, within PS417_10915at 2334.450 kb on + strand, within PS417_10915at 2334.451 kb on - strand, within PS417_10915at 2334.451 kb on - strandat 2334.451 kb on - strand, within PS417_10915at 2334.585 kb on - strand, within PS417_10915at 2334.662 kb on - strand, within PS417_10915at 2334.663 kb on + strand, within PS417_10915at 2334.663 kb on + strand, within PS417_10915at 2334.714 kb on + strand, within PS417_10915at 2334.714 kb on + strand, within PS417_10915at 2334.715 kb on - strand, within PS417_10915at 2334.815 kb on - strandat 2335.122 kb on - strandat 2335.588 kb on + strand, within PS417_10920at 2335.789 kb on + strand, within PS417_10920at 2335.801 kb on - strand, within PS417_10920

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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2,333,092 + PS417_10910 0.25 -2.1
2,333,093 - PS417_10910 0.25 +0.4
2,333,198 - PS417_10910 0.34 -0.7
2,333,394 + PS417_10910 0.51 -0.6
2,333,395 - PS417_10910 0.51 +0.5
2,333,533 + PS417_10910 0.64 -0.4
2,333,945 + -0.8
2,333,945 + +0.4
2,333,946 - -2.5
2,333,946 - +0.6
2,334,096 + -0.1
2,334,096 + PS417_10915 0.16 -0.1
2,334,097 - PS417_10915 0.16 +0.1
2,334,286 + PS417_10915 0.36 -0.6
2,334,450 + PS417_10915 0.54 -0.3
2,334,451 - PS417_10915 0.54 -0.5
2,334,451 - +0.9
2,334,451 - PS417_10915 0.54 -0.5
2,334,585 - PS417_10915 0.68 -1.9
2,334,662 - PS417_10915 0.76 +1.5
2,334,663 + PS417_10915 0.76 +0.5
2,334,663 + PS417_10915 0.76 -0.5
2,334,714 + PS417_10915 0.82 -0.6
2,334,714 + PS417_10915 0.82 -0.9
2,334,715 - PS417_10915 0.82 -0.0
2,334,815 - -1.2
2,335,122 - +2.9
2,335,588 + PS417_10920 0.59 +0.6
2,335,789 + PS417_10920 0.80 +0.3
2,335,801 - PS417_10920 0.82 +0.1

Or see this region's nucleotide sequence