Strain Fitness in Pseudomonas simiae WCS417 around PS417_10915
Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Paraquat dichloride 0.008 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,333,092 | + | PS417_10910 | 0.25 | -2.1 | |
2,333,093 | - | PS417_10910 | 0.25 | +0.4 | |
2,333,198 | - | PS417_10910 | 0.34 | -0.7 | |
2,333,394 | + | PS417_10910 | 0.51 | -0.6 | |
2,333,395 | - | PS417_10910 | 0.51 | +0.5 | |
2,333,533 | + | PS417_10910 | 0.64 | -0.4 | |
2,333,945 | + | -0.8 | |||
2,333,945 | + | +0.4 | |||
2,333,946 | - | -2.5 | |||
2,333,946 | - | +0.6 | |||
2,334,096 | + | -0.1 | |||
2,334,096 | + | PS417_10915 | 0.16 | -0.1 | |
2,334,097 | - | PS417_10915 | 0.16 | +0.1 | |
2,334,286 | + | PS417_10915 | 0.36 | -0.6 | |
2,334,450 | + | PS417_10915 | 0.54 | -0.3 | |
2,334,451 | - | PS417_10915 | 0.54 | -0.5 | |
2,334,451 | - | +0.9 | |||
2,334,451 | - | PS417_10915 | 0.54 | -0.5 | |
2,334,585 | - | PS417_10915 | 0.68 | -1.9 | |
2,334,662 | - | PS417_10915 | 0.76 | +1.5 | |
2,334,663 | + | PS417_10915 | 0.76 | +0.5 | |
2,334,663 | + | PS417_10915 | 0.76 | -0.5 | |
2,334,714 | + | PS417_10915 | 0.82 | -0.6 | |
2,334,714 | + | PS417_10915 | 0.82 | -0.9 | |
2,334,715 | - | PS417_10915 | 0.82 | -0.0 | |
2,334,815 | - | -1.2 | |||
2,335,122 | - | +2.9 | |||
2,335,588 | + | PS417_10920 | 0.59 | +0.6 | |
2,335,789 | + | PS417_10920 | 0.80 | +0.3 | |
2,335,801 | - | PS417_10920 | 0.82 | +0.1 |
Or see this region's nucleotide sequence