Strain Fitness in Pseudomonas simiae WCS417 around PS417_10865

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_10860 and PS417_10865 are separated by 277 nucleotidesPS417_10865 and PS417_10870 are separated by 259 nucleotides PS417_10860: PS417_10860 - flagellar basal body rod protein FlgG, at 2,320,950 to 2,321,735 _10860 PS417_10865: PS417_10865 - GNAT family acetyltransferase, at 2,322,013 to 2,322,468 _10865 PS417_10870: PS417_10870 - GABA permease, at 2,322,728 to 2,324,137 _10870 Position (kb) 2322 2323Strain fitness (log2 ratio) -1 0 1 2at 2321.040 kb on - strand, within PS417_10860at 2321.395 kb on + strand, within PS417_10860at 2321.600 kb on - strand, within PS417_10860at 2321.719 kb on + strandat 2321.720 kb on - strandat 2322.038 kb on + strandat 2322.038 kb on + strandat 2322.039 kb on - strandat 2322.384 kb on - strand, within PS417_10865at 2322.512 kb on + strandat 2322.512 kb on + strandat 2322.512 kb on + strandat 2322.603 kb on - strandat 2322.888 kb on - strand, within PS417_10870at 2323.028 kb on + strand, within PS417_10870at 2323.028 kb on + strand, within PS417_10870

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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2,321,040 - PS417_10860 0.11 -1.1
2,321,395 + PS417_10860 0.57 -1.0
2,321,600 - PS417_10860 0.83 -0.4
2,321,719 + +0.3
2,321,720 - -0.7
2,322,038 + +0.6
2,322,038 + +1.9
2,322,039 - +0.8
2,322,384 - PS417_10865 0.81 -0.7
2,322,512 + +0.3
2,322,512 + +0.7
2,322,512 + -0.5
2,322,603 - +0.3
2,322,888 - PS417_10870 0.11 +1.2
2,323,028 + PS417_10870 0.21 -0.8
2,323,028 + PS417_10870 0.21 -0.9

Or see this region's nucleotide sequence