Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00990 and PS417_00995 are separated by 226 nucleotides PS417_00995 and PS417_01000 are separated by 50 nucleotides
PS417_00990: PS417_00990 - LysR family transcriptional regulator, at 217,839 to 218,690
_00990
PS417_00995: PS417_00995 - alpha/beta hydrolase, at 218,917 to 219,498
_00995
PS417_01000: PS417_01000 - Fis family transcriptional regulator, at 219,549 to 220,475
_01000
Position (kb) 218
219
220 Strain fitness (log2 ratio) -2
-1
0
1 at 217.981 kb on + strand, within PS417_00990 at 217.982 kb on - strand, within PS417_00990 at 218.040 kb on + strand, within PS417_00990 at 218.040 kb on + strand, within PS417_00990 at 218.516 kb on + strand, within PS417_00990 at 218.516 kb on + strand, within PS417_00990 at 218.517 kb on - strand, within PS417_00990 at 218.517 kb on - strand, within PS417_00990 at 218.540 kb on - strand, within PS417_00990 at 218.610 kb on + strand at 218.610 kb on + strand at 218.610 kb on + strand at 218.627 kb on - strand at 218.627 kb on - strand at 218.839 kb on - strand at 218.874 kb on + strand at 218.875 kb on + strand at 218.875 kb on + strand at 218.875 kb on + strand at 218.877 kb on + strand at 218.878 kb on - strand at 219.188 kb on + strand, within PS417_00995 at 219.399 kb on + strand, within PS417_00995 at 219.446 kb on - strand at 219.452 kb on - strand at 219.522 kb on + strand at 219.822 kb on + strand, within PS417_01000 at 219.921 kb on + strand, within PS417_01000 at 219.922 kb on - strand, within PS417_01000 at 219.961 kb on + strand, within PS417_01000 at 220.111 kb on - strand, within PS417_01000 at 220.111 kb on - strand, within PS417_01000 at 220.182 kb on + strand, within PS417_01000 at 220.182 kb on + strand, within PS417_01000 at 220.182 kb on + strand, within PS417_01000 at 220.197 kb on + strand, within PS417_01000 at 220.197 kb on + strand, within PS417_01000 at 220.197 kb on + strand, within PS417_01000
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 217,981 + PS417_00990 0.17 +0.3 217,982 - PS417_00990 0.17 -1.8 218,040 + PS417_00990 0.24 -0.5 218,040 + PS417_00990 0.24 -0.4 218,516 + PS417_00990 0.79 +0.9 218,516 + PS417_00990 0.79 -0.3 218,517 - PS417_00990 0.80 +0.0 218,517 - PS417_00990 0.80 +1.2 218,540 - PS417_00990 0.82 -0.3 218,610 + -0.2 218,610 + -0.2 218,610 + -0.7 218,627 - +0.7 218,627 - +0.0 218,839 - -0.1 218,874 + -1.2 218,875 + -0.1 218,875 + +0.0 218,875 + +0.0 218,877 + -2.7 218,878 - +1.4 219,188 + PS417_00995 0.47 -0.8 219,399 + PS417_00995 0.83 -0.7 219,446 - -0.7 219,452 - -0.3 219,522 + +1.0 219,822 + PS417_01000 0.29 +1.1 219,921 + PS417_01000 0.40 +0.1 219,922 - PS417_01000 0.40 -0.1 219,961 + PS417_01000 0.44 -0.1 220,111 - PS417_01000 0.61 -1.1 220,111 - PS417_01000 0.61 +0.2 220,182 + PS417_01000 0.68 -0.2 220,182 + PS417_01000 0.68 -0.8 220,182 + PS417_01000 0.68 +0.0 220,197 + PS417_01000 0.70 -0.3 220,197 + PS417_01000 0.70 -0.1 220,197 + PS417_01000 0.70 -0.3
Or see this region's nucleotide sequence