Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00885 and PS417_00890 are separated by 167 nucleotides PS417_00890 and PS417_00895 are separated by 371 nucleotides PS417_00895 and PS417_00900 are separated by 180 nucleotides
PS417_00885: PS417_00885 - integrase, at 197,380 to 198,615
_00885
PS417_00890: PS417_00890 - tRNA-Arg, at 198,783 to 198,859
_00890
PS417_00895: PS417_00895 - succinate-semialdehyde dehydrogenase, at 199,231 to 200,673
_00895
PS417_00900: PS417_00900 - 4-aminobutyrate aminotransferase, at 200,854 to 202,131
_00900
Position (kb) 199
200
201 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 198.234 kb on + strand, within PS417_00885 at 198.234 kb on + strand, within PS417_00885 at 198.234 kb on + strand, within PS417_00885 at 198.495 kb on + strand at 198.513 kb on - strand at 198.539 kb on + strand at 198.543 kb on + strand at 198.543 kb on + strand at 198.543 kb on + strand at 198.544 kb on - strand at 198.544 kb on - strand at 198.544 kb on - strand at 198.622 kb on + strand at 198.622 kb on + strand at 198.623 kb on - strand at 198.636 kb on + strand at 198.637 kb on - strand at 198.637 kb on - strand at 198.637 kb on - strand at 198.652 kb on + strand at 198.653 kb on - strand at 198.653 kb on - strand at 198.653 kb on - strand at 198.653 kb on - strand at 198.751 kb on + strand at 198.752 kb on - strand at 198.779 kb on + strand at 198.779 kb on + strand at 198.779 kb on + strand at 198.779 kb on + strand at 198.779 kb on + strand at 198.780 kb on - strand at 198.780 kb on - strand at 198.780 kb on - strand at 198.780 kb on - strand at 198.781 kb on + strand at 198.781 kb on + strand at 198.781 kb on + strand at 198.781 kb on + strand at 198.781 kb on + strand at 198.781 kb on + strand at 198.782 kb on - strand at 199.007 kb on - strand at 199.015 kb on + strand at 199.051 kb on + strand at 199.052 kb on - strand at 199.062 kb on - strand at 199.076 kb on + strand at 199.188 kb on + strand at 199.188 kb on + strand at 199.189 kb on - strand at 199.189 kb on - strand at 199.217 kb on + strand at 199.218 kb on - strand at 199.239 kb on + strand at 199.350 kb on + strand at 199.610 kb on - strand, within PS417_00895 at 199.610 kb on - strand, within PS417_00895 at 200.043 kb on + strand, within PS417_00895 at 200.074 kb on + strand, within PS417_00895 at 200.074 kb on + strand at 200.074 kb on + strand, within PS417_00895 at 200.117 kb on - strand, within PS417_00895 at 200.134 kb on + strand, within PS417_00895 at 200.135 kb on - strand, within PS417_00895 at 200.473 kb on + strand, within PS417_00895 at 200.473 kb on + strand, within PS417_00895 at 200.473 kb on + strand, within PS417_00895 at 200.474 kb on - strand, within PS417_00895 at 200.474 kb on - strand, within PS417_00895 at 200.479 kb on + strand, within PS417_00895 at 200.653 kb on + strand at 200.653 kb on + strand at 200.653 kb on + strand at 200.653 kb on + strand at 200.654 kb on - strand at 200.809 kb on + strand at 200.809 kb on + strand at 201.103 kb on + strand, within PS417_00900 at 201.112 kb on + strand, within PS417_00900 at 201.112 kb on + strand, within PS417_00900
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 198,234 + PS417_00885 0.69 +0.0 198,234 + PS417_00885 0.69 -0.7 198,234 + PS417_00885 0.69 -1.1 198,495 + -0.4 198,513 - -1.3 198,539 + -1.2 198,543 + +0.8 198,543 + -1.7 198,543 + -0.2 198,544 - -0.3 198,544 - -0.8 198,544 - -0.6 198,622 + -0.3 198,622 + -0.7 198,623 - -0.3 198,636 + -0.8 198,637 - +0.6 198,637 - -0.3 198,637 - -0.5 198,652 + +1.5 198,653 - -0.4 198,653 - -0.5 198,653 - -0.1 198,653 - -0.1 198,751 + +1.5 198,752 - -1.4 198,779 + +2.7 198,779 + -0.7 198,779 + -0.5 198,779 + -0.4 198,779 + -0.2 198,780 - -0.4 198,780 - +0.1 198,780 - -0.0 198,780 - -0.0 198,781 + -1.0 198,781 + -0.3 198,781 + -0.4 198,781 + -0.7 198,781 + -0.1 198,781 + -0.7 198,782 - -2.0 199,007 - +0.8 199,015 + -0.4 199,051 + -0.7 199,052 - +1.2 199,062 - +1.4 199,076 + +0.1 199,188 + -0.5 199,188 + -1.5 199,189 - +1.7 199,189 - +0.8 199,217 + -0.1 199,218 - +2.3 199,239 + +1.2 199,350 + +1.7 199,610 - PS417_00895 0.26 +1.9 199,610 - PS417_00895 0.26 +2.1 200,043 + PS417_00895 0.56 +0.5 200,074 + PS417_00895 0.58 +0.4 200,074 + +0.5 200,074 + PS417_00895 0.58 +0.8 200,117 - PS417_00895 0.61 +2.1 200,134 + PS417_00895 0.63 +0.4 200,135 - PS417_00895 0.63 +0.3 200,473 + PS417_00895 0.86 +1.5 200,473 + PS417_00895 0.86 +0.2 200,473 + PS417_00895 0.86 +1.2 200,474 - PS417_00895 0.86 +2.0 200,474 - PS417_00895 0.86 +1.9 200,479 + PS417_00895 0.86 +0.7 200,653 + -0.4 200,653 + +0.7 200,653 + +0.8 200,653 + +0.4 200,654 - +3.2 200,809 + -0.4 200,809 + +1.8 201,103 + PS417_00900 0.19 +3.1 201,112 + PS417_00900 0.20 +3.1 201,112 + PS417_00900 0.20 +1.7
Or see this region's nucleotide sequence