Strain Fitness in Pseudomonas simiae WCS417 around PS417_08135
Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Paraquat dichloride 0.008 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,780,764 | + | PS417_08130 | 0.54 | -2.3 | |
1,780,764 | + | PS417_08130 | 0.54 | -0.5 | |
1,780,764 | + | PS417_08130 | 0.54 | +0.5 | |
1,780,860 | + | PS417_08130 | 0.62 | -0.2 | |
1,781,184 | + | +0.4 | |||
1,781,211 | - | -3.3 | |||
1,781,211 | - | -1.8 | |||
1,781,307 | + | +0.3 | |||
1,781,307 | + | -0.4 | |||
1,781,307 | + | -0.5 | |||
1,781,308 | - | -0.9 | |||
1,781,827 | - | PS417_08135 | 0.23 | -1.9 | |
1,781,919 | + | PS417_08135 | 0.28 | -1.2 | |
1,782,113 | + | PS417_08135 | 0.36 | -0.5 | |
1,782,113 | + | PS417_08135 | 0.36 | +0.3 | |
1,782,182 | - | PS417_08135 | 0.40 | -2.2 | |
1,782,691 | + | PS417_08135 | 0.63 | -0.8 | |
1,782,691 | + | PS417_08135 | 0.63 | -0.8 | |
1,782,798 | + | PS417_08135 | 0.67 | -1.4 | |
1,782,798 | + | PS417_08135 | 0.67 | +1.7 | |
1,782,909 | + | PS417_08135 | 0.72 | -0.9 | |
1,782,911 | + | PS417_08135 | 0.73 | -0.6 | |
1,782,911 | + | PS417_08135 | 0.73 | -0.3 | |
1,782,912 | - | PS417_08135 | 0.73 | -2.4 | |
1,783,314 | + | -0.9 | |||
1,783,446 | + | +0.1 | |||
1,783,467 | + | +0.0 | |||
1,783,467 | + | +0.2 | |||
1,784,206 | + | +0.1 |
Or see this region's nucleotide sequence