Strain Fitness in Pseudomonas simiae WCS417 around PS417_08070

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_08060 and PS417_08065 are separated by 3 nucleotidesPS417_08065 and PS417_08070 overlap by 4 nucleotidesPS417_08070 and PS417_08075 overlap by 4 nucleotidesPS417_08075 and PS417_08080 overlap by 4 nucleotides PS417_08060: PS417_08060 - proline iminopeptidase, at 1,763,484 to 1,764,371 _08060 PS417_08065: PS417_08065 - ABC transporter permease, at 1,764,375 to 1,765,322 _08065 PS417_08070: PS417_08070 - nickel ABC transporter permease, at 1,765,319 to 1,766,176 _08070 PS417_08075: PS417_08075 - methionine ABC transporter ATP-binding protein, at 1,766,173 to 1,767,129 _08075 PS417_08080: PS417_08080 - ABC transporter ATP-binding protein, at 1,767,126 to 1,768,097 _08080 Position (kb) 1765 1766 1767Strain fitness (log2 ratio) -2 -1 0 1at 1764.327 kb on + strandat 1764.327 kb on + strandat 1764.328 kb on - strandat 1764.390 kb on + strandat 1764.550 kb on - strand, within PS417_08065at 1764.580 kb on - strand, within PS417_08065at 1764.580 kb on - strand, within PS417_08065at 1764.633 kb on + strand, within PS417_08065at 1764.669 kb on - strand, within PS417_08065at 1764.686 kb on - strand, within PS417_08065at 1764.906 kb on - strand, within PS417_08065at 1765.000 kb on + strand, within PS417_08065at 1765.000 kb on + strand, within PS417_08065at 1765.001 kb on - strand, within PS417_08065at 1765.212 kb on + strand, within PS417_08065at 1765.212 kb on + strand, within PS417_08065at 1765.212 kb on + strand, within PS417_08065at 1765.213 kb on - strand, within PS417_08065at 1765.213 kb on - strand, within PS417_08065at 1765.460 kb on + strand, within PS417_08070at 1765.461 kb on - strand, within PS417_08070at 1765.535 kb on + strand, within PS417_08070at 1765.535 kb on + strand, within PS417_08070at 1765.536 kb on - strand, within PS417_08070at 1765.561 kb on + strand, within PS417_08070at 1765.561 kb on + strand, within PS417_08070at 1765.561 kb on + strand, within PS417_08070at 1765.578 kb on + strand, within PS417_08070at 1765.579 kb on - strand, within PS417_08070at 1765.579 kb on - strand, within PS417_08070at 1765.579 kb on - strand, within PS417_08070at 1765.579 kb on - strand, within PS417_08070at 1765.579 kb on - strand, within PS417_08070at 1765.652 kb on + strand, within PS417_08070at 1765.653 kb on - strand, within PS417_08070at 1765.772 kb on + strand, within PS417_08070at 1765.816 kb on + strand, within PS417_08070at 1765.995 kb on - strand, within PS417_08070at 1766.857 kb on + strand, within PS417_08075at 1766.857 kb on + strand, within PS417_08075at 1766.890 kb on + strand, within PS417_08075at 1766.891 kb on - strand, within PS417_08075at 1766.920 kb on + strand, within PS417_08075at 1766.921 kb on - strand, within PS417_08075

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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1,764,327 + -0.3
1,764,327 + +0.6
1,764,328 - -0.4
1,764,390 + -1.1
1,764,550 - PS417_08065 0.18 +0.9
1,764,580 - PS417_08065 0.22 +0.8
1,764,580 - PS417_08065 0.22 +0.0
1,764,633 + PS417_08065 0.27 +0.2
1,764,669 - PS417_08065 0.31 +0.1
1,764,686 - PS417_08065 0.33 -0.0
1,764,906 - PS417_08065 0.56 -0.5
1,765,000 + PS417_08065 0.66 +0.5
1,765,000 + PS417_08065 0.66 +0.6
1,765,001 - PS417_08065 0.66 -0.4
1,765,212 + PS417_08065 0.88 -1.0
1,765,212 + PS417_08065 0.88 -0.8
1,765,212 + PS417_08065 0.88 -1.8
1,765,213 - PS417_08065 0.88 -0.6
1,765,213 - PS417_08065 0.88 +0.7
1,765,460 + PS417_08070 0.16 -0.2
1,765,461 - PS417_08070 0.17 +0.4
1,765,535 + PS417_08070 0.25 +0.1
1,765,535 + PS417_08070 0.25 -0.5
1,765,536 - PS417_08070 0.25 -1.7
1,765,561 + PS417_08070 0.28 -0.2
1,765,561 + PS417_08070 0.28 -0.6
1,765,561 + PS417_08070 0.28 -0.2
1,765,578 + PS417_08070 0.30 +0.6
1,765,579 - PS417_08070 0.30 -0.9
1,765,579 - PS417_08070 0.30 -2.1
1,765,579 - PS417_08070 0.30 -1.8
1,765,579 - PS417_08070 0.30 +0.9
1,765,579 - PS417_08070 0.30 -0.8
1,765,652 + PS417_08070 0.39 -0.2
1,765,653 - PS417_08070 0.39 -1.2
1,765,772 + PS417_08070 0.53 -0.9
1,765,816 + PS417_08070 0.58 +1.0
1,765,995 - PS417_08070 0.79 -1.4
1,766,857 + PS417_08075 0.71 +1.3
1,766,857 + PS417_08075 0.71 -0.0
1,766,890 + PS417_08075 0.75 +0.0
1,766,891 - PS417_08075 0.75 +0.6
1,766,920 + PS417_08075 0.78 -0.1
1,766,921 - PS417_08075 0.78 +1.1

Or see this region's nucleotide sequence