Strain Fitness in Pseudomonas simiae WCS417 around PS417_05090

Experiment: Paraquat dichloride 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.008 mg/ml
1,129,763	-		PS417_05080	0.86	-0.5
1,129,766	+		PS417_05080	0.86	+0.8
1,129,766	+		PS417_05080	0.86	-1.1
1,129,766	+		PS417_05080	0.86	+0.6
1,129,766	+		PS417_05080	0.86	-0.3
1,129,766	+		PS417_05080	0.86	-0.5
1,129,766	+		PS417_05080	0.86	+1.3
1,129,766	+		PS417_05080	0.86	-0.3
1,129,766	+		PS417_05080	0.86	+0.2
1,129,767	-		PS417_05080	0.86	-0.4
1,129,776	-		PS417_05080	0.87	+0.0
1,129,788	-		PS417_05080	0.88	+0.4
1,129,894	-				-1.2
1,129,894	-				-0.6
1,129,921	+				-0.2
1,129,925	+				-0.6
1,129,926	-				-0.0
1,129,926	-				+0.4
1,129,957	-				+0.7
1,129,967	-				-0.1
1,130,035	+				-1.0
1,130,088	+				-0.9
1,130,097	+				-0.0
1,130,109	+				-2.0
1,130,109	+				-0.4
1,130,139	+				-1.0
1,130,172	-		PS417_05085	0.15	+0.7
1,130,175	+		PS417_05085	0.16	-0.4
1,130,175	+		PS417_05085	0.16	-0.7
1,130,176	-		PS417_05085	0.16	-2.6
1,130,176	-		PS417_05085	0.16	-0.8
1,130,176	-		PS417_05085	0.16	-0.0
1,130,176	-				-0.3
1,130,176	-		PS417_05085	0.16	-0.1
1,130,178	+		PS417_05085	0.17	+0.9
1,130,178	+		PS417_05085	0.17	+0.8
1,130,179	-		PS417_05085	0.17	-0.7
1,130,204	-		PS417_05085	0.23	-0.2
1,130,277	+		PS417_05085	0.41	+0.7
1,130,277	-		PS417_05085	0.41	-1.0
1,130,277	-		PS417_05085	0.41	-1.9
1,130,521	+				-0.8
1,130,522	-				+0.7
1,130,527	+				+0.5
1,130,527	+				-0.6
1,130,610	+				-1.4
1,130,673	+				-1.5
1,130,743	-				-0.8
1,130,769	+				-1.1
1,130,769	+				-0.0
1,130,770	-				-0.7
1,130,976	+		PS417_05090	0.17	-1.3
1,130,982	+		PS417_05090	0.17	-1.6
1,130,982	+		PS417_05090	0.17	-0.9
1,130,983	-		PS417_05090	0.17	-0.7
1,130,983	-		PS417_05090	0.17	-0.9
1,130,991	+		PS417_05090	0.17	-0.7
1,130,991	+				+1.9
1,130,991	+		PS417_05090	0.17	-0.4
1,130,992	-		PS417_05090	0.17	-0.6
1,131,087	-		PS417_05090	0.21	-0.5
1,131,315	+		PS417_05090	0.31	-1.0
1,131,349	-		PS417_05090	0.33	+0.1
1,131,360	+		PS417_05090	0.33	-1.0
1,131,360	+		PS417_05090	0.33	-1.2
1,131,360	+		PS417_05090	0.33	+1.3
1,131,360	+		PS417_05090	0.33	-1.0
1,131,361	-		PS417_05090	0.33	-1.2
1,131,712	-		PS417_05090	0.48	+0.3
1,131,855	+		PS417_05090	0.54	-1.0
1,131,900	+		PS417_05090	0.56	-1.2
1,131,900	+		PS417_05090	0.56	-2.0
1,131,901	-		PS417_05090	0.56	+0.5
1,131,903	+		PS417_05090	0.56	+0.2
1,131,904	-		PS417_05090	0.56	-0.5
1,132,247	-		PS417_05090	0.71	-1.3
1,132,421	+		PS417_05090	0.79	-1.4
1,132,615	-		PS417_05090	0.87	-2.1
1,132,689	+				-0.3
1,132,694	-				-1.4
1,132,875	-				-1.8
1,133,119	+		PS417_05095	0.11	-0.7
1,133,344	+		PS417_05095	0.35	-1.9
1,133,344	+		PS417_05095	0.35	-0.7
1,133,394	-		PS417_05095	0.40	-0.8
1,133,657	+		PS417_05095	0.68	+0.1
1,133,658	-				+1.3
1,133,658	-		PS417_05095	0.68	+0.5
1,133,658	-		PS417_05095	0.68	-0.1