Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4919

Experiment: LB_plus_SM_buffer with Br60_phage 0.0000005 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4918 and GFF4919 are separated by 691 nucleotidesGFF4919 and GFF4920 are separated by 70 nucleotidesGFF4920 and GFF4921 overlap by 1 nucleotides GFF4918 - hypothetical protein, at 21,026 to 21,148 GFF4918 GFF4919 - Sialidase (EC 3.2.1.18), at 21,840 to 22,988 GFF4919 GFF4920 - Phage tail fibers, at 23,059 to 23,634 GFF4920 GFF4921 - Phage tail fiber protein, at 23,634 to 24,959 GFF4921 Position (kb) 21 22 23Strain fitness (log2 ratio) -2 -1 0 1at 20.965 kb on - strandat 21.145 kb on - strandat 21.908 kb on + strandat 22.295 kb on + strand, within GFF4919at 22.331 kb on - strand, within GFF4919at 22.568 kb on + strand, within GFF4919at 22.712 kb on + strand, within GFF4919at 22.772 kb on + strand, within GFF4919at 22.775 kb on - strand, within GFF4919at 22.830 kb on + strand, within GFF4919at 23.378 kb on + strand, within GFF4920at 23.379 kb on - strand, within GFF4920at 23.379 kb on - strand, within GFF4920at 23.379 kb on - strand, within GFF4920at 23.406 kb on - strand, within GFF4920at 23.502 kb on + strand, within GFF4920at 23.543 kb on + strand, within GFF4920at 23.544 kb on - strand, within GFF4920at 23.575 kb on - strand, within GFF4920at 23.855 kb on + strand, within GFF4921at 23.876 kb on + strand, within GFF4921at 23.891 kb on + strand, within GFF4921

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Br60_phage 0.0000005 MOI
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20,965 - +0.4
21,145 - +0.0
21,908 + +0.9
22,295 + GFF4919 0.40 -0.4
22,331 - GFF4919 0.43 +0.2
22,568 + GFF4919 0.63 -1.0
22,712 + GFF4919 0.76 -1.8
22,772 + GFF4919 0.81 -0.0
22,775 - GFF4919 0.81 -0.0
22,830 + GFF4919 0.86 -0.6
23,378 + GFF4920 0.55 -0.5
23,379 - GFF4920 0.56 -0.0
23,379 - GFF4920 0.56 -0.1
23,379 - GFF4920 0.56 +1.2
23,406 - GFF4920 0.60 -0.7
23,502 + GFF4920 0.77 +0.3
23,543 + GFF4920 0.84 +1.6
23,544 - GFF4920 0.84 -0.6
23,575 - GFF4920 0.90 -0.3
23,855 + GFF4921 0.17 +0.3
23,876 + GFF4921 0.18 -0.1
23,891 + GFF4921 0.19 +0.3

Or see this region's nucleotide sequence