Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1643

Experiment: LB_plus_SM_buffer with Br60_phage 0.0000005 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1642 and GFF1643 are separated by 626 nucleotidesGFF1643 and GFF1644 are separated by 1 nucleotidesGFF1644 and GFF1645 are separated by 36 nucleotides GFF1642 - putative cytoplasmic protein, at 27,438 to 28,421 GFF1642 GFF1643 - hypothetical protein, at 29,048 to 29,647 GFF1643 GFF1644 - Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4), at 29,649 to 30,170 GFF1644 GFF1645 - FIG000859: hypothetical protein YebC, at 30,207 to 30,947 GFF1645 Position (kb) 29 30Strain fitness (log2 ratio) -1 0 1at 29.168 kb on - strand, within GFF1643at 29.170 kb on + strand, within GFF1643at 29.171 kb on - strand, within GFF1643at 29.192 kb on + strand, within GFF1643at 29.249 kb on - strand, within GFF1643at 29.378 kb on + strand, within GFF1643at 29.420 kb on - strand, within GFF1643at 29.423 kb on + strand, within GFF1643at 29.526 kb on + strand, within GFF1643at 29.549 kb on - strand, within GFF1643at 30.455 kb on - strand, within GFF1645at 30.455 kb on - strand, within GFF1645

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Br60_phage 0.0000005 MOI
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29,168 - GFF1643 0.20 +0.6
29,170 + GFF1643 0.20 -0.0
29,171 - GFF1643 0.20 +0.9
29,192 + GFF1643 0.24 +0.4
29,249 - GFF1643 0.34 +0.3
29,378 + GFF1643 0.55 +0.2
29,420 - GFF1643 0.62 -0.1
29,423 + GFF1643 0.62 -0.1
29,526 + GFF1643 0.80 +0.3
29,549 - GFF1643 0.83 +0.4
30,455 - GFF1645 0.33 +0.0
30,455 - GFF1645 0.33 -0.3

Or see this region's nucleotide sequence