Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF157

Experiment: LB_plus_SM_buffer with Br60_phage 0.0000005 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF156 and GFF157 are separated by 1 nucleotidesGFF157 and GFF158 are separated by 605 nucleotides GFF156 - rRNA small subunit methyltransferase H, at 147,742 to 148,683 GFF156 GFF157 - Cell division protein MraZ, at 148,685 to 149,143 GFF157 GFF158 - Fructose repressor FruR, LacI family, at 149,749 to 150,753 GFF158 Position (kb) 148 149 150Strain fitness (log2 ratio) -1 0 1at 148.195 kb on - strand, within GFF156at 148.917 kb on - strand, within GFF157at 148.926 kb on - strand, within GFF157at 149.036 kb on - strand, within GFF157at 149.040 kb on - strand, within GFF157at 149.163 kb on - strandat 149.326 kb on + strandat 149.326 kb on + strandat 149.426 kb on + strandat 149.434 kb on - strandat 149.434 kb on - strandat 149.461 kb on - strandat 149.479 kb on + strandat 149.593 kb on - strandat 149.698 kb on + strandat 149.986 kb on + strand, within GFF158at 150.043 kb on - strand, within GFF158at 150.108 kb on - strand, within GFF158

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Br60_phage 0.0000005 MOI
remove
148,195 - GFF156 0.48 -0.7
148,917 - GFF157 0.51 +0.2
148,926 - GFF157 0.53 -1.4
149,036 - GFF157 0.76 -1.7
149,040 - GFF157 0.77 -1.0
149,163 - -0.2
149,326 + -0.4
149,326 + -0.1
149,426 + -0.2
149,434 - +0.5
149,434 - +0.5
149,461 - +0.7
149,479 + +1.4
149,593 - +0.2
149,698 + -0.1
149,986 + GFF158 0.24 -1.5
150,043 - GFF158 0.29 -1.0
150,108 - GFF158 0.36 -1.4

Or see this region's nucleotide sequence