Strain Fitness in Agrobacterium fabrum C58 around Atu8118

Experiment: R2A with Nitrofurantoin 0.4 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0349 and Atu8118 are separated by 114 nucleotidesAtu8118 and Atu0351 are separated by 142 nucleotidesAtu0351 and Atu0352 are separated by 16 nucleotides Atu0349: Atu0349 - tryptophan-tRNA ligase, at 344,570 to 345,634 Atu0349 Atu8118: Atu8118 - putative universal stress protein, at 345,749 to 346,240 Atu8118 Atu0351: Atu0351 - hypothetical protein, at 346,383 to 346,946 Atu0351 Atu0352: Atu0352 - hypothetical protein, at 346,963 to 347,631 Atu0352 Position (kb) 345 346 347Strain fitness (log2 ratio) -2 -1 0 1at 345.631 kb on + strandat 345.641 kb on - strandat 345.665 kb on + strandat 345.884 kb on - strand, within Atu8118at 345.886 kb on + strand, within Atu8118at 345.886 kb on + strand, within Atu8118at 345.894 kb on - strand, within Atu8118at 345.979 kb on + strand, within Atu8118at 345.979 kb on + strand, within Atu8118at 345.987 kb on - strand, within Atu8118at 345.990 kb on + strand, within Atu8118at 345.998 kb on - strand, within Atu8118

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Nitrofurantoin 0.4 mg/mL
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345,631 + -0.3
345,641 - -1.6
345,665 + -2.1
345,884 - Atu8118 0.27 -1.5
345,886 + Atu8118 0.28 -0.5
345,886 + Atu8118 0.28 -1.4
345,894 - Atu8118 0.29 +0.9
345,979 + Atu8118 0.47 -0.6
345,979 + Atu8118 0.47 -0.4
345,987 - Atu8118 0.48 -0.6
345,990 + Atu8118 0.49 -1.0
345,998 - Atu8118 0.51 -0.2

Or see this region's nucleotide sequence