Strain Fitness in Agrobacterium fabrum C58 around Atu4619

Experiment: R2A with Nitrofurantoin 0.4 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Nitrofurantoin 0.4 mg/mL
1,764,894	+		Atu4617	0.78	-0.9
1,764,902	-		Atu4617	0.79	-0.9
1,764,921	+		Atu4617	0.81	-0.7
1,764,999	-		Atu4617	0.88	-0.9
1,765,009	-		Atu4617	0.89	-2.2
1,765,042	+				-1.2
1,765,124	+				+0.7
1,765,236	-		Atu4618	0.19	-0.6
1,765,247	-		Atu4618	0.21	-0.9
1,765,267	+		Atu4618	0.25	-1.5
1,765,267	+		Atu4618	0.25	-0.9
1,765,275	-		Atu4618	0.26	-0.1
1,765,277	+		Atu4618	0.26	-1.3
1,765,285	-		Atu4618	0.28	-1.7
1,765,287	-		Atu4618	0.28	-1.8
1,765,290	-		Atu4618	0.29	-2.1
1,765,342	+		Atu4618	0.38	-2.2
1,765,366	-		Atu4618	0.42	+0.8
1,765,395	-		Atu4618	0.47	-2.5
1,765,407	+		Atu4618	0.49	-0.3
1,765,407	+		Atu4618	0.49	-1.2
1,765,407	+		Atu4618	0.49	-1.2
1,765,415	-		Atu4618	0.51	-0.4
1,765,415	-		Atu4618	0.51	-0.4
1,765,415	-		Atu4618	0.51	-1.2
1,765,415	-		Atu4618	0.51	-0.8
1,765,417	+		Atu4618	0.51	-0.3
1,765,440	-		Atu4618	0.55	-4.4
1,765,478	+		Atu4618	0.62	+0.3
1,765,478	+		Atu4618	0.62	+0.1
1,765,486	-		Atu4618	0.63	-0.7
1,765,486	-		Atu4618	0.63	-0.3
1,765,526	+		Atu4618	0.70	+1.5
1,765,526	+		Atu4618	0.70	-0.9
1,765,534	-		Atu4618	0.72	-1.6
1,765,625	+		Atu4618	0.88	-0.5
1,765,633	-		Atu4618	0.89	-1.7
1,765,650	+				-0.8
1,765,721	+				-0.5
1,765,764	-				-1.1
1,765,779	+				+0.6
1,765,787	-				+0.0
1,765,792	+				-0.1
1,765,887	+				-0.1
1,765,895	-				+0.1
1,765,900	+				+0.2
1,765,907	-				+1.1
1,765,933	-				+0.1
1,766,014	+				+1.5
1,766,071	+		Atu4619	0.11	+2.4
1,766,071	+		Atu4619	0.11	-0.2
1,766,071	+		Atu4619	0.11	+0.1
1,766,142	+		Atu4619	0.15	+0.7
1,766,142	-		Atu4619	0.15	+0.2
1,766,147	-		Atu4619	0.15	+0.4
1,766,184	+		Atu4619	0.17	+0.3
1,766,217	+		Atu4619	0.18	-0.5
1,766,277	+		Atu4619	0.21	+0.1
1,766,473	+		Atu4619	0.31	+0.3
1,766,481	-		Atu4619	0.31	+1.7
1,766,566	-		Atu4619	0.35	-0.5
1,766,613	+		Atu4619	0.37	-1.8
1,766,669	-		Atu4619	0.40	-0.2
1,766,742	+		Atu4619	0.44	+0.0
1,766,742	+		Atu4619	0.44	-0.7
1,766,750	-		Atu4619	0.44	-0.1
1,766,750	-		Atu4619	0.44	-0.3
1,766,766	+		Atu4619	0.45	+0.7
1,766,766	+		Atu4619	0.45	+0.3
1,766,766	+		Atu4619	0.45	+0.2
1,766,766	+		Atu4619	0.45	+0.3
1,766,766	+		Atu4619	0.45	+0.1
1,766,766	+		Atu4619	0.45	+0.1
1,766,766	+		Atu4619	0.45	+1.2
1,766,774	-		Atu4619	0.45	+0.1
1,766,774	-		Atu4619	0.45	-0.6
1,766,774	-		Atu4619	0.45	+1.2
1,766,774	-		Atu4619	0.45	+0.3
1,766,782	-		Atu4619	0.46	+0.2
1,766,886	-		Atu4619	0.51	-0.8
1,766,890	-		Atu4619	0.51	-0.0
1,766,912	+		Atu4619	0.52	-1.5
1,766,912	+		Atu4619	0.52	-0.1
1,766,920	-		Atu4619	0.52	+2.6
1,766,920	-		Atu4619	0.52	+0.6
1,766,920	-		Atu4619	0.52	+1.3
1,766,920	-		Atu4619	0.52	-0.3
1,766,976	-		Atu4619	0.55	+0.3
1,766,998	-		Atu4619	0.56	+0.2
1,767,026	+		Atu4619	0.57	+1.0
1,767,045	+		Atu4619	0.58	-1.1
1,767,055	+		Atu4619	0.59	+0.2
1,767,125	-		Atu4619	0.62	+0.4
1,767,150	-		Atu4619	0.63	+0.5
1,767,246	+		Atu4619	0.68	-0.1
1,767,257	-		Atu4619	0.69	-0.1
1,767,257	-		Atu4619	0.69	-0.3
1,767,267	-		Atu4619	0.69	-1.2
1,767,310	-		Atu4619	0.71	+0.5
1,767,418	+		Atu4619	0.76	+0.4
1,767,496	-		Atu4619	0.80	+0.2
1,767,498	+		Atu4619	0.80	-0.5
1,767,508	+		Atu4619	0.81	+0.2
1,767,516	-		Atu4619	0.81	+0.5
1,767,517	+		Atu4619	0.81	+2.1
1,767,552	+		Atu4619	0.83	+1.2
1,767,557	+		Atu4619	0.83	+0.4
1,767,602	+		Atu4619	0.85	+0.3
1,767,602	+		Atu4619	0.85	-1.0
1,767,604	-		Atu4619	0.85	+0.2
1,767,641	+		Atu4619	0.87	-0.3
1,767,663	+		Atu4619	0.88	+0.3
1,767,748	+				-0.5
1,767,810	+				+0.5
1,767,813	-				+0.2
1,767,860	+				+0.1
1,767,868	-				-0.2
1,767,868	-				-0.4
1,767,930	+				+0.2
1,768,048	-				-0.3
1,768,097	+				-0.6
1,768,134	+				-0.4
1,768,175	+				+0.4
1,768,196	+				+0.6
1,768,199	+				-0.5
1,768,201	+				-0.4
1,768,203	+				-0.2
1,768,204	-				+0.1
1,768,204	-				-0.5
1,768,204	-				+0.3
1,768,228	+				+0.1
1,768,235	+				+1.0
1,768,240	+				-0.5
1,768,240	+				+0.1
1,768,240	+				+0.0
1,768,240	+				+0.4
1,768,243	-				-0.2
1,768,248	-		Atu4620	0.10	+1.3
1,768,248	-		Atu4620	0.10	+0.3
1,768,272	-		Atu4620	0.13	-0.2
1,768,304	-		Atu4620	0.18	+0.0
1,768,310	+		Atu4620	0.19	-1.2
1,768,381	-		Atu4620	0.28	-0.0
1,768,391	+		Atu4620	0.30	-1.0
1,768,399	-		Atu4620	0.31	+0.1
1,768,401	+		Atu4620	0.31	+0.1
1,768,461	+		Atu4620	0.39	+0.4
1,768,469	-		Atu4620	0.40	-0.3
1,768,542	-		Atu4620	0.50	-0.7
1,768,590	-		Atu4620	0.57	+1.0
1,768,611	-		Atu4620	0.59	-0.2
1,768,616	-		Atu4620	0.60	+0.1
1,768,649	-		Atu4620	0.64	+0.1
1,768,843	-				+0.1
1,768,891	+				+1.2
1,768,894	-				-0.5