Strain Fitness in Agrobacterium fabrum C58 around Atu4243

Experiment: R2A with Nitrofurantoin 0.4 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Nitrofurantoin 0.4 mg/mL
1,366,476	-		Atu4241	0.59	+1.7
1,366,529	+		Atu4241	0.63	+0.1
1,366,554	+		Atu4241	0.64	-0.5
1,366,630	-		Atu4241	0.69	+1.6
1,366,643	-		Atu4241	0.70	+0.1
1,366,759	+		Atu4241	0.78	-0.1
1,366,759	+		Atu4241	0.78	-0.7
1,366,824	+		Atu4241	0.83	+0.1
1,366,824	+		Atu4241	0.83	+0.4
1,366,824	+		Atu4241	0.83	+1.1
1,366,824	+		Atu4241	0.83	-0.3
1,366,824	+		Atu4241	0.83	-0.8
1,366,832	-		Atu4241	0.83	-0.1
1,366,832	-		Atu4241	0.83	+0.6
1,366,864	-		Atu4241	0.85	-1.3
1,366,866	-		Atu4241	0.85	+0.7
1,366,954	-				+0.6
1,366,982	+				-1.1
1,367,023	-				+0.2
1,367,110	-				+0.6
1,367,135	+		Atu4242	0.17	-0.6
1,367,135	+		Atu4242	0.17	-0.0
1,367,135	+		Atu4242	0.17	-0.1
1,367,143	-		Atu4242	0.19	-0.0
1,367,258	+		Atu4242	0.56	-0.1
1,367,265	+		Atu4242	0.58	-0.2
1,367,270	+		Atu4242	0.59	-0.1
1,367,297	-		Atu4242	0.68	-0.2
1,367,372	-				-0.0
1,367,442	+				-0.7
1,367,548	+				-0.0
1,367,677	+		Atu4243	0.22	-0.8
1,367,677	-		Atu4243	0.22	+0.6
1,367,720	-		Atu4243	0.26	+0.5
1,367,826	-		Atu4243	0.37	+1.6
1,367,875	+		Atu4243	0.42	+0.8
1,367,885	+		Atu4243	0.43	+0.3
1,367,919	+		Atu4243	0.46	+0.3
1,367,919	+		Atu4243	0.46	+0.1
1,367,966	-		Atu4243	0.51	-0.0
1,368,031	-		Atu4243	0.57	+1.1
1,368,102	+		Atu4243	0.64	+0.3
1,368,102	+		Atu4243	0.64	+0.9
1,368,102	+		Atu4243	0.64	+1.5
1,368,133	-		Atu4243	0.67	-0.3
1,368,136	+		Atu4243	0.67	+0.1
1,368,136	+		Atu4243	0.67	-0.2
1,368,151	+		Atu4243	0.69	+0.1
1,368,151	+		Atu4243	0.69	+0.1
1,368,158	+		Atu4243	0.70	+0.1
1,368,207	+		Atu4243	0.74	+0.3
1,368,225	+		Atu4243	0.76	+0.0
1,368,296	+		Atu4243	0.83	+0.1
1,368,394	-				-0.1
1,368,409	-				-0.8
1,368,523	-				-1.2
1,368,524	-				-0.5
1,368,566	-				-0.2
1,368,642	+		Atu4244	0.13	-0.2
1,368,702	+		Atu4244	0.20	+0.7
1,368,710	+		Atu4244	0.21	+1.1
1,368,718	-		Atu4244	0.22	+0.5
1,368,718	-		Atu4244	0.22	-0.5
1,368,718	-		Atu4244	0.22	-0.8
1,368,718	-		Atu4244	0.22	+1.2
1,368,728	-		Atu4244	0.23	-0.5
1,368,769	+		Atu4244	0.28	+2.1
1,368,777	-		Atu4244	0.29	+0.5
1,368,884	+		Atu4244	0.41	+0.3
1,368,932	-		Atu4244	0.47	-0.0
1,369,026	-		Atu4244	0.57	+0.2
1,369,113	-		Atu4244	0.67	+0.8
1,369,239	-		Atu4244	0.82	-0.2
1,369,290	-		Atu4244	0.87	-0.2
1,369,290	-		Atu4244	0.87	-0.9
1,369,291	+		Atu4244	0.88	+0.4
1,369,355	+				-1.0
1,369,383	+				-0.0
1,369,391	-				-0.1
1,369,456	-				+0.2
1,369,456	-				-0.3