Strain Fitness in Agrobacterium fabrum C58 around Atu4151

Experiment: R2A with Nitrofurantoin 0.4 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Nitrofurantoin 0.4 mg/mL
1,268,039	+				-0.2
1,268,047	-				+0.3
1,268,104	-				+0.2
1,268,303	+		Atu4150	0.22	-0.1
1,268,306	-		Atu4150	0.22	-0.2
1,268,311	-		Atu4150	0.22	-0.1
1,268,313	+		Atu4150	0.23	+0.3
1,268,313	+		Atu4150	0.23	-0.4
1,268,321	-		Atu4150	0.24	+0.9
1,268,503	+		Atu4150	0.44	+0.1
1,268,503	+		Atu4150	0.44	+0.4
1,268,536	+		Atu4150	0.48	-0.3
1,268,591	-		Atu4150	0.54	-0.1
1,268,621	+		Atu4150	0.57	+0.4
1,268,745	-		Atu4150	0.71	+0.3
1,268,757	-		Atu4150	0.73	+0.9
1,268,765	+		Atu4150	0.74	+1.1
1,268,842	-		Atu4150	0.82	+0.4
1,268,862	-		Atu4150	0.84	+0.0
1,268,875	+		Atu4150	0.86	-0.1
1,268,885	-		Atu4150	0.87	-0.5
1,269,018	+				-0.8
1,269,031	+				+0.1
1,269,039	-				+0.1
1,269,039	-				-0.4
1,269,039	-				+0.2
1,269,081	+				+0.0
1,269,089	-				-1.0
1,269,146	-		Atu4151	0.13	+1.4
1,269,238	+		Atu4151	0.23	-0.7
1,269,384	+		Atu4151	0.39	-1.0
1,269,384	+		Atu4151	0.39	+0.4
1,269,407	+		Atu4151	0.41	-0.2
1,269,407	+		Atu4151	0.41	+0.2
1,269,681	-		Atu4151	0.72	-0.1
1,269,765	+		Atu4151	0.81	+0.2
1,269,797	-		Atu4151	0.85	+1.4
1,269,890	-				+0.1
1,270,097	-				-0.5
1,270,167	-				-0.3
1,270,190	+				-0.4
1,270,282	+				-0.2
1,270,282	+				+0.7
1,270,282	+				-0.6
1,270,282	+				-0.2
1,270,282	+				+0.6
1,270,282	+				-0.1
1,270,282	+				-0.1
1,270,290	-				-0.3
1,270,290	-				-0.6
1,270,290	-				+0.3
1,270,290	-				-0.2
1,270,290	-				+0.1
1,270,290	-				-1.6
1,270,290	-				-1.0
1,270,290	-				+0.1
1,270,290	-				+1.0
1,270,290	-				+0.1
1,270,290	-				-0.2
1,270,312	-		Atu4153	0.11	-0.7
1,270,379	+		Atu4153	0.15	-0.2
1,270,534	+		Atu4153	0.25	-0.2
1,270,534	+		Atu4153	0.25	-0.8
1,270,569	+		Atu4153	0.28	-0.1
1,270,746	-		Atu4153	0.39	+0.6
1,270,792	-		Atu4153	0.42	-1.0
1,270,847	+		Atu4153	0.46	-0.3
1,270,901	+		Atu4153	0.49	-0.5