Strain Fitness in Agrobacterium fabrum C58 around Atu4045

Experiment: R2A with Nitrofurantoin 0.4 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Nitrofurantoin 0.4 mg/mL
1,157,233	-				-0.0
1,157,249	-				+0.4
1,157,303	-		Atu4044	0.12	-0.2
1,157,457	-		Atu4044	0.26	+0.4
1,157,469	-		Atu4044	0.27	-2.3
1,157,660	+		Atu4044	0.45	-0.1
1,157,668	-		Atu4044	0.46	+1.1
1,157,668	-		Atu4044	0.46	+0.9
1,157,668	-		Atu4044	0.46	-0.2
1,157,718	-		Atu4044	0.51	+0.5
1,157,753	+		Atu4044	0.54	-1.0
1,157,761	-		Atu4044	0.55	+0.1
1,157,761	-		Atu4044	0.55	-0.0
1,157,786	+		Atu4044	0.57	-0.1
1,157,799	-		Atu4044	0.58	-0.5
1,157,833	+		Atu4044	0.62	+0.1
1,157,841	-		Atu4044	0.62	+0.2
1,158,025	+		Atu4044	0.80	-0.6
1,158,056	+		Atu4044	0.83	+0.5
1,158,062	-		Atu4044	0.83	-0.5
1,158,108	+		Atu4044	0.87	+1.6
1,158,114	+		Atu4044	0.88	+0.7
1,158,122	-		Atu4044	0.89	+0.8
1,158,122	-		Atu4044	0.89	-0.3
1,158,122	-		Atu4044	0.89	-0.1
1,158,131	+		Atu4044	0.90	+1.5
1,158,139	-				+2.1
1,158,139	-				+0.6
1,158,143	+				+0.3
1,158,151	-				+1.5
1,158,151	-				-0.3
1,158,151	-				+0.1
1,158,271	+				+0.3
1,158,281	-				-0.0
1,158,286	-				-1.9
1,158,382	+		Atu4045	0.17	-0.0
1,158,382	+		Atu4045	0.17	+0.1
1,158,382	+		Atu4045	0.17	+0.5
1,158,382	+		Atu4045	0.17	-0.5
1,158,390	-		Atu4045	0.18	+0.5
1,158,390	-		Atu4045	0.18	+0.4
1,158,390	-		Atu4045	0.18	+0.5
1,158,492	+		Atu4045	0.29	+0.5
1,158,500	-		Atu4045	0.30	+0.1
1,158,500	-		Atu4045	0.30	-0.0
1,158,514	+		Atu4045	0.32	+0.7
1,158,546	-		Atu4045	0.35	+1.0
1,158,634	+		Atu4045	0.45	+1.0
1,158,743	+		Atu4045	0.57	-0.4
1,158,882	-		Atu4045	0.73	+0.2
1,158,983	+		Atu4045	0.84	-0.2
1,158,983	+		Atu4045	0.84	+1.3
1,158,988	+		Atu4045	0.85	+0.4
1,158,993	+		Atu4045	0.86	+0.5
1,158,996	+		Atu4045	0.86	+0.8
1,159,030	+		Atu4045	0.90	+0.1
1,159,116	+				+0.2
1,159,131	+				-1.0
1,159,152	+				+0.8
1,159,154	+				-0.1
1,159,154	+				-0.2
1,159,162	-				+1.1
1,159,162	-				-0.2
1,159,162	-				+0.1
1,159,162	-				+0.5
1,159,326	-				+0.6
1,159,329	-				-0.3
1,159,357	-				+1.1
1,159,379	+				+0.4
1,159,387	-				-0.3
1,159,513	+		Atu4046	0.17	-0.1
1,159,513	+		Atu4046	0.17	-0.1
1,159,513	+		Atu4046	0.17	+0.4
1,159,521	-		Atu4046	0.18	+0.1
1,159,573	+		Atu4046	0.23	+0.4
1,159,736	+		Atu4046	0.40	+0.1
1,159,781	+		Atu4046	0.44	-0.3
1,159,850	-		Atu4046	0.51	+0.1
1,159,853	+		Atu4046	0.51	-0.2
1,159,921	-		Atu4046	0.58	-0.2
1,159,932	+		Atu4046	0.59	-0.4
1,159,932	+		Atu4046	0.59	+0.6
1,159,990	+		Atu4046	0.65	+0.4
1,159,995	+		Atu4046	0.66	-0.1
1,159,998	-		Atu4046	0.66	+0.3
1,159,998	-		Atu4046	0.66	-0.4
1,160,051	-		Atu4046	0.71	-0.1