Strain Fitness in Agrobacterium fabrum C58 around Atu3973

Experiment: R2A with Nitrofurantoin 0.4 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Nitrofurantoin 0.4 mg/mL
1,077,597	+				-0.1
1,077,640	-				+0.2
1,077,781	-				+0.2
1,077,796	-		Atu3972	0.10	+0.0
1,077,944	+		Atu3972	0.29	-0.5
1,077,952	-		Atu3972	0.30	+0.6
1,077,962	-		Atu3972	0.31	+1.5
1,077,990	-		Atu3972	0.35	-0.4
1,078,056	+		Atu3972	0.43	+0.1
1,078,079	-		Atu3972	0.46	+0.5
1,078,104	+		Atu3972	0.49	+0.0
1,078,263	-		Atu3972	0.69	+0.7
1,078,284	+		Atu3972	0.72	-0.3
1,078,315	+		Atu3972	0.75	-0.4
1,078,438	-				-0.2
1,078,541	+				-0.0
1,078,549	-				+0.8
1,078,639	-		Atu3973	0.13	-0.2
1,078,664	+		Atu3973	0.17	+1.3
1,078,694	-		Atu3973	0.21	-0.7
1,078,696	+		Atu3973	0.21	-0.1
1,078,799	-		Atu3973	0.36	+0.1
1,079,158	+		Atu3973	0.86	+0.4
1,079,161	-		Atu3973	0.87	+0.7
1,079,166	-		Atu3973	0.87	+1.6
1,079,166	-		Atu3973	0.87	+1.7
1,079,184	+				+0.0
1,079,184	+				+0.1
1,079,191	+				+0.9
1,079,373	+				+0.4
1,079,462	-				-0.2
1,079,462	-				+0.6
1,079,497	-				-0.5
1,079,563	-				+0.0
1,079,589	+				-0.3
1,079,728	+				+0.5
1,079,747	+				+0.1
1,079,848	+				-0.7
1,079,848	+				+0.6
1,079,896	+		Atu3974	0.10	+0.3
1,079,973	-		Atu3974	0.12	-0.2
1,079,983	-		Atu3974	0.12	+0.2
1,079,987	+		Atu3974	0.12	+1.2
1,080,012	+		Atu3974	0.12	-1.0
1,080,017	+		Atu3974	0.13	+0.0
1,080,025	-		Atu3974	0.13	-0.4
1,080,098	-		Atu3974	0.14	+0.2
1,080,105	+		Atu3974	0.14	+0.3
1,080,182	-		Atu3974	0.16	+0.0
1,080,194	-		Atu3974	0.16	-0.5
1,080,205	-		Atu3974	0.16	+0.6
1,080,253	-		Atu3974	0.17	+0.1
1,080,254	-		Atu3974	0.17	-0.0