Strain Fitness in Agrobacterium fabrum C58 around Atu2592

Experiment: R2A with Nitrofurantoin 0.4 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Nitrofurantoin 0.4 mg/mL
2,568,894	-		Atu2591	0.20	-1.0
2,568,976	-		Atu2591	0.27	-2.4
2,568,979	+		Atu2591	0.27	-2.7
2,568,987	-		Atu2591	0.28	-1.7
2,568,989	+		Atu2591	0.28	+0.7
2,569,014	+		Atu2591	0.30	-3.1
2,569,041	+		Atu2591	0.33	-5.5
2,569,087	-		Atu2591	0.37	-2.6
2,569,161	+		Atu2591	0.43	-1.9
2,569,194	-		Atu2591	0.46	-0.7
2,569,209	+		Atu2591	0.48	-3.2
2,569,217	-		Atu2591	0.48	-2.3
2,569,305	+		Atu2591	0.56	-2.5
2,569,360	-		Atu2591	0.61	+2.3
2,569,467	+		Atu2591	0.71	+1.3
2,569,528	+		Atu2591	0.76	+2.3
2,569,531	-		Atu2591	0.76	+2.3
2,569,555	-		Atu2591	0.78	-3.4
2,569,555	-		Atu2591	0.78	+1.3
2,569,768	+				-0.4
2,569,768	+				+0.0
2,569,768	+				+0.2
2,569,768	+				+0.0
2,569,776	-				-2.3
2,569,845	+				-2.1
2,569,999	-		Atu2592	0.18	-0.7
2,570,027	+		Atu2592	0.20	+0.3
2,570,069	-		Atu2592	0.24	+0.3
2,570,203	-		Atu2592	0.35	-3.9
2,570,238	+		Atu2592	0.38	-2.7
2,570,266	-		Atu2592	0.41	+0.0
2,570,269	+		Atu2592	0.41	+2.3
2,570,270	+		Atu2592	0.41	-2.9
2,570,273	+		Atu2592	0.41	-0.3
2,570,341	-		Atu2592	0.47	+0.7
2,570,388	-		Atu2592	0.51	-0.3
2,570,481	-		Atu2592	0.60	-1.9
2,570,486	-		Atu2592	0.60	+0.3
2,570,489	+		Atu2592	0.60	+0.3
2,570,693	-		Atu2592	0.78	-1.2
2,570,809	+		Atu2592	0.88	-2.3
2,570,826	+		Atu2592	0.89	-1.9
2,570,909	+				+0.8
2,570,948	-				-0.1
2,570,968	+				+0.3
2,570,972	+				-1.7
2,571,029	-		Atu2593	0.16	-0.1
2,571,199	-		Atu2593	0.39	-0.3
2,571,262	-		Atu2593	0.47	+0.5
2,571,291	+		Atu2593	0.51	+0.4
2,571,452	-		Atu2593	0.73	+0.1
2,571,485	+		Atu2593	0.77	+0.1
2,571,493	-		Atu2593	0.78	-0.2
2,571,555	+		Atu2593	0.87	+0.3
2,571,573	-		Atu2593	0.89	-0.1
2,571,585	-				+0.3
2,571,670	+				+0.2
2,571,699	+				-0.4
2,571,703	-				-0.0
2,571,704	+				-0.2
2,571,750	+				+1.0
2,571,823	-		Atu2594	0.12	-0.4
2,571,897	-		Atu2594	0.18	-1.2
2,571,942	+		Atu2594	0.22	+0.4