Strain Fitness in Agrobacterium fabrum C58 around Atu2583

Experiment: R2A with Nitrofurantoin 0.4 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Nitrofurantoin 0.4 mg/mL
2,557,319	+		Atu2582	0.41	-2.3
2,557,363	-		Atu2582	0.45	-0.9
2,557,422	-		Atu2582	0.49	-1.8
2,557,573	+		Atu2582	0.61	-2.5
2,557,678	-		Atu2582	0.69	-1.5
2,557,680	+		Atu2582	0.69	-1.1
2,557,682	+		Atu2582	0.70	-1.6
2,557,698	-		Atu2582	0.71	-2.9
2,557,725	-		Atu2582	0.73	-1.7
2,557,758	-		Atu2582	0.76	-1.5
2,557,760	+		Atu2582	0.76	-1.1
2,557,760	+		Atu2582	0.76	-0.3
2,557,933	-		Atu2582	0.89	+1.2
2,558,058	-				+0.7
2,558,128	-				-0.9
2,558,138	-				-1.1
2,558,203	+				+0.7
2,558,247	+				-0.1
2,558,306	-				-3.1
2,558,373	+		Atu2583	0.10	-2.3
2,558,384	+		Atu2583	0.11	-3.7
2,558,389	+		Atu2583	0.11	-2.9
2,558,392	-		Atu2583	0.12	+2.3
2,558,392	-		Atu2583	0.12	+1.3
2,558,432	-		Atu2583	0.15	-3.6
2,558,437	-		Atu2583	0.16	-0.3
2,558,698	+		Atu2583	0.40	+0.7
2,558,705	+		Atu2583	0.40	-0.7
2,558,707	+		Atu2583	0.40	-3.2
2,558,786	+		Atu2583	0.48	-2.2
2,558,814	+		Atu2583	0.50	-0.1
2,558,822	-		Atu2583	0.51	-2.4
2,558,861	+		Atu2583	0.54	-1.6
2,558,861	+		Atu2583	0.54	-3.2
2,558,861	+		Atu2583	0.54	+0.3
2,558,861	+		Atu2583	0.54	-4.0
2,558,861	+		Atu2583	0.54	+0.7
2,558,861	+		Atu2583	0.54	-4.0
2,558,861	+		Atu2583	0.54	+1.3
2,558,861	+		Atu2583	0.54	-2.1
2,558,869	-		Atu2583	0.55	-2.8
2,558,869	-		Atu2583	0.55	-1.4
2,558,869	-		Atu2583	0.55	-2.1
2,558,869	-		Atu2583	0.55	-0.6
2,558,869	-		Atu2583	0.55	-1.4
2,558,869	-		Atu2583	0.55	+0.3
2,558,869	-		Atu2583	0.55	-1.8
2,558,869	-		Atu2583	0.55	-0.1
2,558,879	-		Atu2583	0.56	-1.1
2,558,886	-		Atu2583	0.57	-4.3
2,558,900	-		Atu2583	0.58	-0.7
2,559,072	+		Atu2583	0.74	-4.2
2,559,073	+		Atu2583	0.74	-0.1
2,559,112	-		Atu2583	0.77	-1.1
2,559,118	+		Atu2583	0.78	+0.7
2,559,118	+		Atu2583	0.78	+0.7
2,559,172	+		Atu2583	0.83	-2.7
2,559,229	-		Atu2583	0.88	-0.9
2,559,236	-		Atu2583	0.89	-3.3
2,559,244	-		Atu2583	0.89	-2.1
2,559,246	+		Atu2583	0.90	+0.7
2,559,361	-				+0.5
2,559,700	-		Atu2584	0.46	-1.9
2,559,710	+		Atu2584	0.47	-4.3
2,559,734	-		Atu2584	0.51	+1.3
2,559,848	+		Atu2584	0.66	-2.9
2,559,928	+		Atu2584	0.77	-2.3
2,559,943	+		Atu2584	0.79	-0.1
2,560,012	+		Atu2584	0.88	+0.7
2,560,022	+		Atu2584	0.89	-2.7
2,560,036	+				-0.7
2,560,074	+				-4.3
2,560,115	+				-2.8
2,560,128	-				-4.0
2,560,219	-		Atu2585	0.15	-0.9
2,560,225	-		Atu2585	0.16	-1.4
2,560,246	+		Atu2585	0.18	+1.3
2,560,275	-		Atu2585	0.22	+2.3