Strain Fitness in Agrobacterium fabrum C58 around Atu2575

Experiment: R2A with Nitrofurantoin 0.4 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Nitrofurantoin 0.4 mg/mL
2,544,618	+				-0.1
2,544,800	+				+1.4
2,544,811	+				-0.1
2,544,826	-				+0.6
2,544,833	+				+0.0
2,544,854	-				-0.6
2,545,023	+		Atu2574	0.33	-0.1
2,545,247	-		Atu2574	0.68	-0.1
2,545,259	-		Atu2574	0.70	-1.2
2,545,305	+		Atu2574	0.77	+0.2
2,545,305	+		Atu2574	0.77	+0.3
2,545,305	+		Atu2574	0.77	+0.0
2,545,374	+		Atu2574	0.87	+0.3
2,545,411	-				-0.3
2,545,432	+				+0.4
2,545,499	-				-0.2
2,545,589	-				+0.2
2,545,693	+				-0.3
2,545,710	-		Atu2575	0.11	-0.8
2,545,781	-		Atu2575	0.13	+0.6
2,545,819	+		Atu2575	0.15	-1.2
2,545,928	+		Atu2575	0.19	+0.1
2,545,933	+		Atu2575	0.20	+0.8
2,545,933	+		Atu2575	0.20	+1.2
2,545,939	-		Atu2575	0.20	-0.2
2,545,941	+		Atu2575	0.20	+0.6
2,545,986	+		Atu2575	0.22	-0.3
2,546,027	+		Atu2575	0.23	-0.1
2,546,035	+		Atu2575	0.24	+0.4
2,546,035	-		Atu2575	0.24	+0.2
2,546,042	+		Atu2575	0.24	-0.2
2,546,072	+		Atu2575	0.25	-0.5
2,546,106	-		Atu2575	0.27	-0.4
2,546,237	+		Atu2575	0.32	-0.1
2,546,245	-		Atu2575	0.32	-0.0
2,546,250	-		Atu2575	0.32	+0.2
2,546,300	+		Atu2575	0.35	-0.6
2,546,308	-		Atu2575	0.35	+0.4
2,546,308	-		Atu2575	0.35	-0.1
2,546,353	-		Atu2575	0.37	-0.5
2,546,353	-		Atu2575	0.37	-0.2
2,546,386	-		Atu2575	0.38	+0.4
2,546,386	-		Atu2575	0.38	+0.1
2,546,726	+		Atu2575	0.52	+0.4
2,546,836	+		Atu2575	0.56	+0.0
2,546,969	+		Atu2575	0.62	+0.1
2,546,977	-		Atu2575	0.62	+0.4
2,547,083	+		Atu2575	0.66	+0.6
2,547,143	+		Atu2575	0.69	-0.1
2,547,295	-		Atu2575	0.75	+0.1
2,547,330	+		Atu2575	0.76	+1.0
2,547,343	-		Atu2575	0.77	+0.4
2,547,387	-		Atu2575	0.79	+2.0
2,547,446	-		Atu2575	0.81	+0.4
2,547,477	-		Atu2575	0.82	-0.4
2,547,500	-		Atu2575	0.83	-0.0
2,547,539	+		Atu2575	0.85	+0.0
2,547,547	-		Atu2575	0.85	-1.7
2,547,547	-		Atu2575	0.85	+1.1
2,547,736	-				+0.0
2,547,747	+				+0.4
2,547,755	-				-0.1
2,547,772	-				-0.3
2,547,772	-				+0.5
2,547,807	-				-0.0
2,547,968	+				+0.0
2,548,083	-		Atu2576	0.11	-0.2
2,548,140	+		Atu2576	0.14	-0.9
2,548,188	-		Atu2576	0.17	-0.1
2,548,312	+		Atu2576	0.23	+0.5
2,548,504	+		Atu2576	0.34	+0.1
2,548,596	+		Atu2576	0.39	+0.5
2,548,662	+		Atu2576	0.42	-0.0
2,548,717	+		Atu2576	0.45	+0.1
2,548,752	+		Atu2576	0.47	-0.4
2,548,775	+		Atu2576	0.48	-0.2
2,548,843	+		Atu2576	0.52	-0.0
2,548,843	+		Atu2576	0.52	+0.1
2,548,851	-		Atu2576	0.52	-0.5
2,548,861	-		Atu2576	0.53	+0.1