Strain Fitness in Agrobacterium fabrum C58 around Atu2573

Experiment: R2A with Nitrofurantoin 0.4 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Nitrofurantoin 0.4 mg/mL
2,542,774	+		Atu2572	0.34	-0.1
2,542,918	-		Atu2572	0.46	+2.7
2,542,950	-		Atu2572	0.49	-1.2
2,543,119	-		Atu2572	0.63	-0.4
2,543,182	+		Atu2572	0.69	-0.2
2,543,229	-		Atu2572	0.73	-0.3
2,543,279	+		Atu2572	0.77	-0.4
2,543,287	-		Atu2572	0.77	-0.2
2,543,381	+		Atu2572	0.85	+0.2
2,543,385	+		Atu2572	0.86	-0.2
2,543,390	+		Atu2572	0.86	-0.2
2,543,531	+				-0.2
2,543,547	+				+0.4
2,543,553	+				+0.3
2,543,649	+				-0.2
2,543,649	+				-0.6
2,543,658	+				-1.9
2,543,708	+				+0.6
2,543,758	-				-0.9
2,543,769	+				+0.0
2,543,800	+				+0.2
2,543,808	-				-0.2
2,543,899	+		Atu2573	0.19	+0.4
2,543,932	-		Atu2573	0.23	+0.2
2,543,988	+		Atu2573	0.31	+2.2
2,544,134	-		Atu2573	0.52	+0.7
2,544,196	+		Atu2573	0.61	+0.3
2,544,206	+		Atu2573	0.63	+0.2
2,544,308	-		Atu2573	0.77	+0.0
2,544,393	+		Atu2573	0.90	+0.2
2,544,439	-				-0.5
2,544,618	+				-0.1
2,544,800	+				+1.4
2,544,811	+				-0.1
2,544,826	-				+0.6
2,544,833	+				+0.0
2,544,854	-				-0.6
2,545,023	+		Atu2574	0.33	-0.1
2,545,247	-		Atu2574	0.68	-0.1
2,545,259	-		Atu2574	0.70	-1.2
2,545,305	+		Atu2574	0.77	+0.2
2,545,305	+		Atu2574	0.77	+0.3
2,545,305	+		Atu2574	0.77	+0.0
2,545,374	+		Atu2574	0.87	+0.3
2,545,411	-				-0.3
2,545,432	+				+0.4