Strain Fitness in Agrobacterium fabrum C58 around Atu2058

Experiment: R2A with Nitrofurantoin 0.4 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Nitrofurantoin 0.4 mg/mL
2,021,656	+		Atu2057	0.77	+0.6
2,022,116	-				-0.2
2,022,260	-				-0.1
2,022,329	-				+0.1
2,022,329	-				+1.2
2,022,376	-				+0.1
2,022,393	-				-0.0
2,022,447	-				-0.7
2,022,518	-				-0.0
2,022,556	+				-0.6
2,022,680	-		Atu2058	0.26	-0.4
2,022,749	+		Atu2058	0.38	-1.3
2,022,954	+		Atu2058	0.71	-0.6
2,023,109	+				+0.0
2,023,109	+				+0.5
2,023,117	-				+0.2
2,023,117	-				-0.0
2,023,132	-				-0.8
2,023,162	-				-0.6
2,023,310	-				-0.3
2,023,320	-				-0.0
2,023,322	+				-0.2
2,023,330	-				+0.4
2,023,330	-				-1.3
2,023,330	-				-1.0
2,023,363	+				-1.4
2,023,371	-				-0.1
2,023,473	-		Atu2059	0.24	-0.2
2,023,514	+		Atu2059	0.30	+0.1
2,023,522	-		Atu2059	0.32	-0.2
2,023,524	+		Atu2059	0.32	+0.2
2,023,524	+		Atu2059	0.32	+0.1
2,023,588	-		Atu2059	0.43	-0.4
2,023,678	-		Atu2059	0.58	+0.7
2,023,767	-		Atu2059	0.73	-0.3
2,023,769	-		Atu2059	0.73	+0.6
2,023,769	-		Atu2059	0.73	-0.2
2,023,797	+		Atu2059	0.78	-0.4
2,023,812	+		Atu2059	0.81	-0.3
2,023,846	-		Atu2059	0.86	+0.2
2,023,883	-				+2.2
2,024,116	-				-1.8