Strain Fitness in Agrobacterium fabrum C58 around Atu1194

Experiment: R2A with Nitrofurantoin 0.4 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Nitrofurantoin 0.4 mg/mL
1,184,073	-				+0.4
1,184,143	-				+0.5
1,185,007	+		Atu1194	0.10	+0.3
1,185,007	+		Atu1194	0.10	+0.5
1,185,015	-		Atu1194	0.11	+0.8
1,185,049	+		Atu1194	0.14	-0.0
1,185,049	+		Atu1194	0.14	+0.0
1,185,049	+		Atu1194	0.14	+0.4
1,185,049	+		Atu1194	0.14	+0.7
1,185,049	+		Atu1194	0.14	+0.4
1,185,049	+		Atu1194	0.14	+1.0
1,185,049	+		Atu1194	0.14	+0.1
1,185,049	+		Atu1194	0.14	+0.9
1,185,057	-		Atu1194	0.15	-0.2
1,185,057	-		Atu1194	0.15	+1.6
1,185,251	+		Atu1194	0.31	-0.4
1,185,311	+		Atu1194	0.37	-0.3
1,185,356	-		Atu1194	0.40	+2.1
1,185,460	+		Atu1194	0.49	+0.1
1,185,466	+		Atu1194	0.50	+0.3
1,185,499	-		Atu1194	0.53	+0.2
1,185,500	-		Atu1194	0.53	+0.5
1,185,522	-		Atu1194	0.55	+0.8
1,185,522	-		Atu1194	0.55	-0.8
1,185,537	+		Atu1194	0.56	+0.8
1,185,646	+		Atu1194	0.65	+0.1
1,185,729	+		Atu1194	0.72	+1.1
1,185,828	+		Atu1194	0.81	-0.1
1,185,844	-		Atu1194	0.82	+0.7
1,185,853	-		Atu1194	0.83	+0.1
1,185,857	+		Atu1194	0.83	-0.3
1,185,865	+		Atu1194	0.84	-0.2
1,185,876	+		Atu1194	0.85	+1.5
1,185,945	+				+0.6
1,185,997	-				-0.0
1,186,024	+				-0.1
1,186,032	-				+1.4
1,186,052	+				-0.6
1,186,188	+				-0.1
1,186,258	+				-0.2
1,186,266	-				+0.0
1,186,288	+				-0.7
1,186,418	+				-0.1
1,186,497	-				-1.0
1,186,548	+				-0.3
1,186,938	+		Atu1195	0.18	+0.3
1,186,951	-		Atu1195	0.19	+0.2
1,186,967	-		Atu1195	0.19	+1.0
1,186,967	-		Atu1195	0.19	-0.1
1,186,994	-		Atu1195	0.21	+0.2
1,187,001	-		Atu1195	0.21	-1.4