Strain Fitness in Agrobacterium fabrum C58 around Atu0476

Experiment: R2A with Nitrofurantoin 0.4 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0474 and Atu0475 overlap by 4 nucleotidesAtu0475 and Atu0476 are separated by 268 nucleotidesAtu0476 and Atu0477 are separated by 22 nucleotidesAtu0477 and Atu0478 are separated by 211 nucleotides Atu0474: Atu0474 - putative RNA polymerase sigma-70 factor, at 462,837 to 463,382 Atu0474 Atu0475: Atu0475 - hypothetical protein, at 463,379 to 464,083 Atu0475 Atu0476: Atu0476 - aquaporin, at 464,352 to 465,077 Atu0476 Atu0477: Atu0477 - hypothetical protein, at 465,100 to 465,423 Atu0477 Atu0478: Atu0478 - glycosyltransferase, at 465,635 to 467,182 Atu0478 Position (kb) 464 465 466Strain fitness (log2 ratio) -2 -1 0 1 2at 463.419 kb on + strandat 463.424 kb on + strandat 463.424 kb on + strandat 463.444 kb on + strandat 463.452 kb on - strand, within Atu0475at 463.475 kb on + strand, within Atu0475at 463.475 kb on + strand, within Atu0475at 463.539 kb on + strand, within Atu0475at 463.564 kb on - strand, within Atu0475at 463.564 kb on - strand, within Atu0475at 463.564 kb on - strand, within Atu0475at 463.662 kb on + strand, within Atu0475at 463.715 kb on + strand, within Atu0475at 463.745 kb on - strand, within Atu0475at 463.834 kb on - strand, within Atu0475at 463.837 kb on - strand, within Atu0475at 463.861 kb on + strand, within Atu0475at 463.861 kb on + strand, within Atu0475at 463.867 kb on + strand, within Atu0475at 463.869 kb on - strand, within Atu0475at 463.869 kb on - strand, within Atu0475at 463.876 kb on + strand, within Atu0475at 463.876 kb on + strand, within Atu0475at 463.876 kb on + strand, within Atu0475at 463.879 kb on - strand, within Atu0475at 463.884 kb on - strand, within Atu0475at 463.884 kb on - strand, within Atu0475at 463.884 kb on - strand, within Atu0475at 463.932 kb on + strand, within Atu0475at 463.987 kb on + strand, within Atu0475at 464.009 kb on - strand, within Atu0475at 464.009 kb on - strand, within Atu0475at 464.127 kb on - strandat 464.220 kb on + strandat 464.228 kb on - strandat 464.228 kb on - strandat 464.347 kb on + strandat 464.414 kb on - strandat 464.414 kb on - strandat 464.477 kb on - strand, within Atu0476at 464.489 kb on + strand, within Atu0476at 464.495 kb on + strand, within Atu0476at 464.539 kb on + strand, within Atu0476at 464.623 kb on - strand, within Atu0476at 464.658 kb on - strand, within Atu0476at 464.702 kb on + strand, within Atu0476at 464.795 kb on - strand, within Atu0476at 464.845 kb on + strand, within Atu0476at 464.845 kb on + strand, within Atu0476at 464.845 kb on + strand, within Atu0476at 464.853 kb on - strand, within Atu0476at 464.853 kb on - strand, within Atu0476at 464.853 kb on - strand, within Atu0476at 464.853 kb on - strand, within Atu0476at 464.853 kb on - strand, within Atu0476at 464.857 kb on + strand, within Atu0476at 464.857 kb on + strand, within Atu0476at 464.865 kb on - strand, within Atu0476at 464.928 kb on - strand, within Atu0476at 464.932 kb on - strand, within Atu0476at 464.941 kb on + strand, within Atu0476at 464.957 kb on + strand, within Atu0476at 464.957 kb on + strand, within Atu0476at 464.960 kb on - strand, within Atu0476at 464.962 kb on + strand, within Atu0476at 464.974 kb on - strand, within Atu0476at 465.172 kb on + strand, within Atu0477at 465.384 kb on - strand, within Atu0477at 465.410 kb on - strandat 465.448 kb on + strandat 465.474 kb on - strandat 465.538 kb on + strandat 465.538 kb on + strandat 465.600 kb on + strandat 465.609 kb on + strandat 465.610 kb on - strandat 465.709 kb on - strandat 465.711 kb on - strandat 465.760 kb on + strandat 465.882 kb on + strand, within Atu0478at 465.922 kb on - strand, within Atu0478at 465.952 kb on - strand, within Atu0478at 465.964 kb on - strand, within Atu0478at 465.998 kb on + strand, within Atu0478at 466.042 kb on + strand, within Atu0478at 466.050 kb on - strand, within Atu0478

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Nitrofurantoin 0.4 mg/mL
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463,419 + +0.1
463,424 + -1.7
463,424 + -0.5
463,444 + -1.2
463,452 - Atu0475 0.10 +0.4
463,475 + Atu0475 0.14 +0.5
463,475 + Atu0475 0.14 -1.8
463,539 + Atu0475 0.23 +0.3
463,564 - Atu0475 0.26 +0.8
463,564 - Atu0475 0.26 -0.4
463,564 - Atu0475 0.26 -0.3
463,662 + Atu0475 0.40 -0.1
463,715 + Atu0475 0.48 +0.2
463,745 - Atu0475 0.52 -0.2
463,834 - Atu0475 0.65 -1.4
463,837 - Atu0475 0.65 -0.6
463,861 + Atu0475 0.68 +0.3
463,861 + Atu0475 0.68 +0.1
463,867 + Atu0475 0.69 +0.0
463,869 - Atu0475 0.70 -1.0
463,869 - Atu0475 0.70 +0.4
463,876 + Atu0475 0.70 +0.2
463,876 + Atu0475 0.70 +0.1
463,876 + Atu0475 0.70 +0.1
463,879 - Atu0475 0.71 +2.6
463,884 - Atu0475 0.72 +0.5
463,884 - Atu0475 0.72 -0.3
463,884 - Atu0475 0.72 -0.9
463,932 + Atu0475 0.78 +0.6
463,987 + Atu0475 0.86 -0.1
464,009 - Atu0475 0.89 -0.5
464,009 - Atu0475 0.89 -0.5
464,127 - +0.2
464,220 + -1.1
464,228 - -0.5
464,228 - +0.2
464,347 + +0.4
464,414 - -1.0
464,414 - +1.4
464,477 - Atu0476 0.17 -0.5
464,489 + Atu0476 0.19 +0.4
464,495 + Atu0476 0.20 -0.3
464,539 + Atu0476 0.26 +0.9
464,623 - Atu0476 0.37 -0.4
464,658 - Atu0476 0.42 -1.3
464,702 + Atu0476 0.48 -0.1
464,795 - Atu0476 0.61 -0.4
464,845 + Atu0476 0.68 +0.1
464,845 + Atu0476 0.68 -0.1
464,845 + Atu0476 0.68 -1.1
464,853 - Atu0476 0.69 +0.8
464,853 - Atu0476 0.69 -0.2
464,853 - Atu0476 0.69 +0.3
464,853 - Atu0476 0.69 -0.3
464,853 - Atu0476 0.69 -0.4
464,857 + Atu0476 0.70 +0.1
464,857 + Atu0476 0.70 -0.1
464,865 - Atu0476 0.71 -0.1
464,928 - Atu0476 0.79 +0.1
464,932 - Atu0476 0.80 -0.2
464,941 + Atu0476 0.81 -1.3
464,957 + Atu0476 0.83 -0.3
464,957 + Atu0476 0.83 -0.9
464,960 - Atu0476 0.84 -0.3
464,962 + Atu0476 0.84 -0.6
464,974 - Atu0476 0.86 -1.3
465,172 + Atu0477 0.22 +0.1
465,384 - Atu0477 0.88 -1.0
465,410 - +0.2
465,448 + -0.4
465,474 - -1.5
465,538 + -0.2
465,538 + -0.1
465,600 + -0.4
465,609 + -0.1
465,610 - +1.1
465,709 - +1.4
465,711 - -0.3
465,760 + -0.5
465,882 + Atu0478 0.16 +0.1
465,922 - Atu0478 0.19 +0.8
465,952 - Atu0478 0.20 +1.0
465,964 - Atu0478 0.21 -0.4
465,998 + Atu0478 0.23 -0.2
466,042 + Atu0478 0.26 +0.3
466,050 - Atu0478 0.27 +0.1

Or see this region's nucleotide sequence