Strain Fitness in Agrobacterium fabrum C58 around Atu0017

Experiment: R2A with Nitrofurantoin 0.4 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0015 and Atu0016 are separated by 69 nucleotidesAtu0016 and Atu0017 are separated by 102 nucleotidesAtu0017 and Atu0018 are separated by 1 nucleotides Atu0015: Atu0015 - intracellular PHB depolymerase, at 12,339 to 13,535 Atu0015 Atu0016: Atu0016 - hypothetical protein, at 13,605 to 14,372 Atu0016 Atu0017: Atu0017 - N-(5-phosphoribosyl) anthranilate isomerase, at 14,475 to 15,137 Atu0017 Atu0018: Atu0018 - tryptophan synthase beta subunit, at 15,139 to 16,359 Atu0018 Position (kb) 14 15 16Strain fitness (log2 ratio) -2 -1 0 1at 13.483 kb on + strandat 13.609 kb on - strandat 14.690 kb on - strand, within Atu0017at 14.703 kb on + strand, within Atu0017at 14.819 kb on + strand, within Atu0017at 14.946 kb on - strand, within Atu0017at 14.987 kb on + strand, within Atu0017at 15.033 kb on - strand, within Atu0017

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Nitrofurantoin 0.4 mg/mL
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13,483 + +0.2
13,609 - +0.5
14,690 - Atu0017 0.32 +1.2
14,703 + Atu0017 0.34 -1.2
14,819 + Atu0017 0.52 +0.2
14,946 - Atu0017 0.71 -1.4
14,987 + Atu0017 0.77 -2.0
15,033 - Atu0017 0.84 -0.8

Or see this region's nucleotide sequence