Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4692

Experiment: LB_plus_SM_buffer with Br60_phage 0.000005 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4691 and GFF4692 are separated by 235 nucleotidesGFF4692 and GFF4693 are separated by 116 nucleotides GFF4691 - Alanyl-tRNA synthetase (EC 6.1.1.7), at 1,151 to 3,781 GFF4691 GFF4692 - Regulatory protein RecX, at 4,017 to 4,517 GFF4692 GFF4693 - RecA protein, at 4,634 to 5,695 GFF4693 Position (kb) 4 5Strain fitness (log2 ratio) -2 -1 0 1at 3.904 kb on - strandat 4.039 kb on - strandat 4.039 kb on - strandat 4.132 kb on + strand, within GFF4692at 4.315 kb on + strand, within GFF4692at 4.316 kb on - strand, within GFF4692at 4.316 kb on - strand, within GFF4692at 4.457 kb on + strand, within GFF4692at 4.457 kb on + strand, within GFF4692at 4.458 kb on - strand, within GFF4692at 4.461 kb on + strand, within GFF4692at 4.556 kb on + strandat 4.557 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Br60_phage 0.000005 MOI
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3,904 - -0.8
4,039 - +0.1
4,039 - +0.1
4,132 + GFF4692 0.23 -0.6
4,315 + GFF4692 0.59 -1.9
4,316 - GFF4692 0.60 -0.1
4,316 - GFF4692 0.60 -2.2
4,457 + GFF4692 0.88 +1.3
4,457 + GFF4692 0.88 +0.3
4,458 - GFF4692 0.88 +0.2
4,461 + GFF4692 0.89 -0.1
4,556 + -0.0
4,557 - +0.0

Or see this region's nucleotide sequence