Experiment: LB_plus_SM_buffer with Br60_phage 0.000005 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4601 and GFF4602 are separated by 114 nucleotides GFF4602 and GFF4603 are separated by 46 nucleotides
GFF4601 - Phosphoglucomutase (EC 5.4.2.2), at 390,302 to 391,942
GFF4601
GFF4602 - 'Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)' transl_table=11, at 392,057 to 392,560
GFF4602
GFF4603 - Putrescine/proton symporter, putrescine/ornithine antiporter PotE, at 392,607 to 393,926
GFF4603
Position (kb) 392
393 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 391.072 kb on - strand, within GFF4601 at 391.072 kb on - strand, within GFF4601 at 391.072 kb on - strand, within GFF4601 at 391.105 kb on + strand, within GFF4601 at 391.288 kb on + strand, within GFF4601 at 391.289 kb on - strand, within GFF4601 at 391.293 kb on - strand, within GFF4601 at 391.534 kb on + strand, within GFF4601 at 391.634 kb on + strand, within GFF4601 at 392.137 kb on + strand, within GFF4602 at 392.137 kb on + strand, within GFF4602 at 392.138 kb on - strand, within GFF4602 at 392.138 kb on - strand, within GFF4602 at 392.266 kb on - strand, within GFF4602 at 392.270 kb on - strand, within GFF4602 at 392.270 kb on - strand, within GFF4602 at 392.271 kb on + strand, within GFF4602 at 392.294 kb on + strand, within GFF4602 at 392.295 kb on - strand, within GFF4602 at 392.295 kb on - strand, within GFF4602 at 392.295 kb on - strand, within GFF4602 at 392.298 kb on - strand, within GFF4602 at 392.346 kb on - strand, within GFF4602 at 392.513 kb on - strand at 392.581 kb on - strand at 392.654 kb on - strand at 392.656 kb on - strand at 392.732 kb on + strand at 392.734 kb on + strand at 392.734 kb on + strand at 392.735 kb on - strand at 392.836 kb on + strand, within GFF4603 at 392.843 kb on + strand, within GFF4603 at 392.843 kb on + strand, within GFF4603 at 392.844 kb on - strand, within GFF4603 at 393.215 kb on - strand, within GFF4603 at 393.215 kb on - strand, within GFF4603 at 393.327 kb on + strand, within GFF4603 at 393.393 kb on + strand, within GFF4603 at 393.397 kb on + strand, within GFF4603 at 393.397 kb on + strand, within GFF4603 at 393.397 kb on + strand, within GFF4603 at 393.398 kb on - strand, within GFF4603 at 393.398 kb on - strand, within GFF4603 at 393.398 kb on - strand, within GFF4603 at 393.476 kb on + strand, within GFF4603 at 393.477 kb on - strand, within GFF4603 at 393.494 kb on + strand, within GFF4603 at 393.497 kb on - strand, within GFF4603
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Br60_phage 0.000005 MOI remove 391,072 - GFF4601 0.47 -1.8 391,072 - GFF4601 0.47 -2.5 391,072 - GFF4601 0.47 -2.8 391,105 + GFF4601 0.49 -3.5 391,288 + GFF4601 0.60 -2.9 391,289 - GFF4601 0.60 -2.3 391,293 - GFF4601 0.60 -1.2 391,534 + GFF4601 0.75 -3.6 391,634 + GFF4601 0.81 -2.2 392,137 + GFF4602 0.16 +0.2 392,137 + GFF4602 0.16 +0.7 392,138 - GFF4602 0.16 -0.8 392,138 - GFF4602 0.16 +0.0 392,266 - GFF4602 0.41 +0.2 392,270 - GFF4602 0.42 +0.2 392,270 - GFF4602 0.42 -0.5 392,271 + GFF4602 0.42 +0.2 392,294 + GFF4602 0.47 +0.9 392,295 - GFF4602 0.47 +0.6 392,295 - GFF4602 0.47 +0.7 392,295 - GFF4602 0.47 +0.5 392,298 - GFF4602 0.48 +0.5 392,346 - GFF4602 0.57 +0.2 392,513 - +0.5 392,581 - +0.2 392,654 - -0.2 392,656 - -0.1 392,732 + +0.1 392,734 + -0.5 392,734 + +1.2 392,735 - +0.5 392,836 + GFF4603 0.17 -0.2 392,843 + GFF4603 0.18 +0.5 392,843 + GFF4603 0.18 +0.0 392,844 - GFF4603 0.18 +0.1 393,215 - GFF4603 0.46 -0.5 393,215 - GFF4603 0.46 +0.1 393,327 + GFF4603 0.55 -0.2 393,393 + GFF4603 0.60 +0.5 393,397 + GFF4603 0.60 +0.8 393,397 + GFF4603 0.60 +0.5 393,397 + GFF4603 0.60 -0.1 393,398 - GFF4603 0.60 +0.2 393,398 - GFF4603 0.60 +0.4 393,398 - GFF4603 0.60 -0.1 393,476 + GFF4603 0.66 +0.3 393,477 - GFF4603 0.66 +0.6 393,494 + GFF4603 0.67 -0.4 393,497 - GFF4603 0.67 +0.5
Or see this region's nucleotide sequence