Experiment: Paraquat dichloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23460 and PS417_23465 overlap by 20 nucleotides PS417_23465 and PS417_23470 are separated by 137 nucleotides PS417_23470 and PS417_23475 are separated by 65 nucleotides PS417_23475 and PS417_23480 are separated by 2 nucleotides
PS417_23460: PS417_23460 - LysR family transcriptional regulator, at 5,080,737 to 5,081,633
_23460
PS417_23465: PS417_23465 - flavodoxin, at 5,081,614 to 5,082,069
_23465
PS417_23470: PS417_23470 - histidine kinase, at 5,082,207 to 5,082,674
_23470
PS417_23475: PS417_23475 - hypothetical protein, at 5,082,740 to 5,083,345
_23475
PS417_23480: PS417_23480 - MerR family transcriptional regulator, at 5,083,348 to 5,084,298
_23480
Position (kb) 5082
5083 Strain fitness (log2 ratio) -1
0
1
2 at 5081.313 kb on + strand, within PS417_23460 at 5081.563 kb on - strand at 5081.773 kb on - strand, within PS417_23465 at 5081.780 kb on + strand, within PS417_23465 at 5081.781 kb on - strand, within PS417_23465 at 5081.781 kb on - strand, within PS417_23465 at 5081.781 kb on - strand, within PS417_23465 at 5081.858 kb on + strand, within PS417_23465 at 5081.858 kb on + strand at 5081.859 kb on - strand, within PS417_23465 at 5081.941 kb on + strand, within PS417_23465 at 5081.941 kb on + strand, within PS417_23465 at 5081.942 kb on - strand, within PS417_23465 at 5081.942 kb on - strand, within PS417_23465 at 5081.942 kb on - strand, within PS417_23465 at 5082.039 kb on - strand at 5082.105 kb on - strand at 5082.127 kb on - strand at 5082.212 kb on + strand at 5082.213 kb on - strand at 5082.300 kb on + strand, within PS417_23470 at 5082.300 kb on + strand, within PS417_23470 at 5082.513 kb on + strand, within PS417_23470 at 5082.513 kb on + strand, within PS417_23470 at 5082.513 kb on + strand, within PS417_23470 at 5082.514 kb on - strand, within PS417_23470 at 5082.537 kb on + strand, within PS417_23470 at 5082.537 kb on + strand, within PS417_23470 at 5082.537 kb on + strand, within PS417_23470 at 5082.537 kb on + strand, within PS417_23470 at 5083.099 kb on - strand, within PS417_23475
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.002 mg/ml remove 5,081,313 + PS417_23460 0.64 -0.2 5,081,563 - -0.3 5,081,773 - PS417_23465 0.35 -0.0 5,081,780 + PS417_23465 0.36 -0.6 5,081,781 - PS417_23465 0.37 -0.0 5,081,781 - PS417_23465 0.37 +0.2 5,081,781 - PS417_23465 0.37 +1.0 5,081,858 + PS417_23465 0.54 +0.8 5,081,858 + +1.1 5,081,859 - PS417_23465 0.54 +0.2 5,081,941 + PS417_23465 0.72 +0.8 5,081,941 + PS417_23465 0.72 -0.3 5,081,942 - PS417_23465 0.72 +1.1 5,081,942 - PS417_23465 0.72 +0.6 5,081,942 - PS417_23465 0.72 +0.0 5,082,039 - -1.7 5,082,105 - +0.1 5,082,127 - +0.5 5,082,212 + +0.8 5,082,213 - -0.2 5,082,300 + PS417_23470 0.20 +0.3 5,082,300 + PS417_23470 0.20 -0.1 5,082,513 + PS417_23470 0.65 +2.0 5,082,513 + PS417_23470 0.65 +1.1 5,082,513 + PS417_23470 0.65 +1.2 5,082,514 - PS417_23470 0.66 +0.1 5,082,537 + PS417_23470 0.71 +0.1 5,082,537 + PS417_23470 0.71 +1.0 5,082,537 + PS417_23470 0.71 -0.3 5,082,537 + PS417_23470 0.71 +0.6 5,083,099 - PS417_23475 0.59 +0.1
Or see this region's nucleotide sequence