Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4391

Experiment: LB_plus_SM_buffer with Br60_phage 0.000005 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4389 and GFF4390 overlap by 1 nucleotidesGFF4390 and GFF4391 are separated by 110 nucleotidesGFF4391 and GFF4392 are separated by 240 nucleotidesGFF4392 and GFF4393 are separated by 78 nucleotides GFF4389 - FIG000557: hypothetical protein co-occurring with RecR, at 173,095 to 173,424 GFF4389 GFF4390 - Recombination protein RecR, at 173,424 to 174,029 GFF4390 GFF4391 - Chaperone protein HtpG, at 174,140 to 176,014 GFF4391 GFF4392 - Adenylate kinase (EC 2.7.4.3), at 176,255 to 176,899 GFF4392 GFF4393 - Adenylate kinase (EC 2.7.4.3), at 176,978 to 177,118 GFF4393 Position (kb) 174 175 176 177Strain fitness (log2 ratio) -2 -1 0 1at 173.453 kb on + strandat 173.630 kb on + strand, within GFF4390at 173.633 kb on + strand, within GFF4390at 173.700 kb on + strand, within GFF4390at 173.700 kb on + strand, within GFF4390at 173.701 kb on - strand, within GFF4390at 173.890 kb on - strand, within GFF4390at 173.890 kb on - strand, within GFF4390at 173.890 kb on - strand, within GFF4390at 174.134 kb on - strandat 174.355 kb on + strand, within GFF4391at 174.355 kb on + strand, within GFF4391at 174.361 kb on + strand, within GFF4391at 174.362 kb on - strand, within GFF4391at 174.555 kb on + strand, within GFF4391at 174.555 kb on + strand, within GFF4391at 174.556 kb on - strand, within GFF4391at 174.560 kb on - strand, within GFF4391at 174.623 kb on + strand, within GFF4391at 174.672 kb on + strand, within GFF4391at 174.672 kb on + strand, within GFF4391at 174.673 kb on - strand, within GFF4391at 174.673 kb on - strand, within GFF4391at 174.673 kb on - strand, within GFF4391at 174.673 kb on - strand, within GFF4391at 174.875 kb on + strand, within GFF4391at 174.949 kb on + strand, within GFF4391at 174.960 kb on - strand, within GFF4391at 174.974 kb on + strand, within GFF4391at 174.974 kb on + strand, within GFF4391at 174.975 kb on - strand, within GFF4391at 175.038 kb on - strand, within GFF4391at 175.041 kb on + strand, within GFF4391at 175.091 kb on - strand, within GFF4391at 175.120 kb on + strand, within GFF4391at 175.121 kb on - strand, within GFF4391at 175.121 kb on - strand, within GFF4391at 175.395 kb on - strand, within GFF4391at 175.395 kb on - strand, within GFF4391at 175.451 kb on + strand, within GFF4391at 175.452 kb on - strand, within GFF4391at 175.550 kb on + strand, within GFF4391at 175.551 kb on - strand, within GFF4391at 175.570 kb on + strand, within GFF4391at 175.571 kb on - strand, within GFF4391at 175.592 kb on - strand, within GFF4391at 175.835 kb on + strandat 175.836 kb on - strandat 176.124 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Br60_phage 0.000005 MOI
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173,453 + -0.9
173,630 + GFF4390 0.34 +0.4
173,633 + GFF4390 0.34 +0.5
173,700 + GFF4390 0.46 +0.2
173,700 + GFF4390 0.46 -0.1
173,701 - GFF4390 0.46 -0.1
173,890 - GFF4390 0.77 -0.2
173,890 - GFF4390 0.77 -0.7
173,890 - GFF4390 0.77 -1.7
174,134 - -0.8
174,355 + GFF4391 0.11 -0.3
174,355 + GFF4391 0.11 -1.0
174,361 + GFF4391 0.12 -0.1
174,362 - GFF4391 0.12 -0.3
174,555 + GFF4391 0.22 -0.6
174,555 + GFF4391 0.22 -0.5
174,556 - GFF4391 0.22 -0.3
174,560 - GFF4391 0.22 -0.4
174,623 + GFF4391 0.26 -0.4
174,672 + GFF4391 0.28 -0.7
174,672 + GFF4391 0.28 -0.8
174,673 - GFF4391 0.28 -0.8
174,673 - GFF4391 0.28 +0.2
174,673 - GFF4391 0.28 -0.1
174,673 - GFF4391 0.28 +0.5
174,875 + GFF4391 0.39 -0.3
174,949 + GFF4391 0.43 -1.3
174,960 - GFF4391 0.44 -1.1
174,974 + GFF4391 0.44 +0.3
174,974 + GFF4391 0.44 -0.2
174,975 - GFF4391 0.45 -2.0
175,038 - GFF4391 0.48 -1.7
175,041 + GFF4391 0.48 -0.6
175,091 - GFF4391 0.51 -0.8
175,120 + GFF4391 0.52 -1.1
175,121 - GFF4391 0.52 -1.0
175,121 - GFF4391 0.52 +0.4
175,395 - GFF4391 0.67 -0.9
175,395 - GFF4391 0.67 -0.5
175,451 + GFF4391 0.70 -0.9
175,452 - GFF4391 0.70 -1.5
175,550 + GFF4391 0.75 -0.4
175,551 - GFF4391 0.75 -1.1
175,570 + GFF4391 0.76 -0.2
175,571 - GFF4391 0.76 -0.6
175,592 - GFF4391 0.77 -1.5
175,835 + -0.5
175,836 - -0.2
176,124 - +0.3

Or see this region's nucleotide sequence