Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4043

Experiment: LB_plus_SM_buffer with Br60_phage 0.000005 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4041 and GFF4042 are separated by 77 nucleotidesGFF4042 and GFF4043 are separated by 55 nucleotidesGFF4043 and GFF4044 are separated by 218 nucleotides GFF4041 - FIG00613320: hypothetical protein, at 3,629 to 4,429 GFF4041 GFF4042 - SAM-dependent methyltransferase YafE (UbiE paralog), at 4,507 to 5,277 GFF4042 GFF4043 - Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-), at 5,333 to 6,553 GFF4043 GFF4044 - Hydroxyacylglutathione hydrolase (EC 3.1.2.6), at 6,772 to 7,527 GFF4044 Position (kb) 5 6 7Strain fitness (log2 ratio) -3 -2 -1 0 1at 4.338 kb on + strand, within GFF4041at 4.479 kb on - strandat 4.571 kb on + strandat 4.572 kb on - strandat 4.572 kb on - strandat 4.779 kb on - strand, within GFF4042at 4.782 kb on + strand, within GFF4042at 4.785 kb on + strand, within GFF4042at 4.805 kb on - strand, within GFF4042at 5.025 kb on + strand, within GFF4042at 5.029 kb on + strand, within GFF4042at 5.029 kb on + strand, within GFF4042at 5.030 kb on - strand, within GFF4042at 5.139 kb on + strand, within GFF4042at 5.247 kb on + strandat 5.247 kb on + strandat 5.276 kb on - strandat 5.332 kb on - strandat 5.350 kb on + strandat 5.372 kb on - strandat 5.391 kb on - strandat 5.401 kb on + strandat 5.487 kb on + strand, within GFF4043at 5.492 kb on - strand, within GFF4043at 5.665 kb on - strand, within GFF4043at 5.665 kb on - strand, within GFF4043at 5.665 kb on - strand, within GFF4043at 5.687 kb on - strand, within GFF4043at 5.777 kb on - strand, within GFF4043at 5.777 kb on - strand, within GFF4043at 5.782 kb on - strand, within GFF4043at 5.782 kb on - strand, within GFF4043at 5.849 kb on - strand, within GFF4043at 5.945 kb on + strand, within GFF4043at 5.995 kb on + strand, within GFF4043at 5.996 kb on - strand, within GFF4043at 6.107 kb on - strand, within GFF4043at 6.171 kb on - strand, within GFF4043at 6.218 kb on - strand, within GFF4043at 6.231 kb on - strand, within GFF4043at 6.333 kb on - strand, within GFF4043at 6.356 kb on - strand, within GFF4043at 6.384 kb on + strand, within GFF4043at 6.385 kb on - strand, within GFF4043at 6.385 kb on - strand, within GFF4043at 6.388 kb on + strand, within GFF4043at 6.389 kb on - strand, within GFF4043at 6.389 kb on - strand, within GFF4043at 6.389 kb on - strand, within GFF4043at 6.391 kb on - strand, within GFF4043at 6.411 kb on - strand, within GFF4043at 6.424 kb on - strand, within GFF4043at 6.424 kb on - strand, within GFF4043at 6.431 kb on - strand, within GFF4043at 6.431 kb on - strand, within GFF4043at 6.442 kb on - strandat 6.536 kb on - strandat 6.681 kb on - strandat 6.721 kb on - strandat 6.721 kb on - strandat 6.763 kb on + strandat 6.952 kb on - strand, within GFF4044at 7.017 kb on + strand, within GFF4044at 7.017 kb on + strand, within GFF4044at 7.018 kb on - strand, within GFF4044at 7.022 kb on - strand, within GFF4044at 7.245 kb on + strand, within GFF4044at 7.246 kb on - strand, within GFF4044at 7.401 kb on + strand, within GFF4044at 7.402 kb on - strand, within GFF4044at 7.402 kb on - strand, within GFF4044at 7.513 kb on - strandat 7.527 kb on + strandat 7.528 kb on - strandat 7.530 kb on - strandat 7.532 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Br60_phage 0.000005 MOI
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4,338 + GFF4041 0.89 +0.1
4,479 - +0.2
4,571 + -0.1
4,572 - -0.6
4,572 - -0.8
4,779 - GFF4042 0.35 +0.7
4,782 + GFF4042 0.36 -0.2
4,785 + GFF4042 0.36 +0.1
4,805 - GFF4042 0.39 +0.2
5,025 + GFF4042 0.67 -0.4
5,029 + GFF4042 0.68 -0.1
5,029 + GFF4042 0.68 -0.4
5,030 - GFF4042 0.68 -0.4
5,139 + GFF4042 0.82 +0.1
5,247 + -0.0
5,247 + -0.7
5,276 - +0.1
5,332 - -0.6
5,350 + -1.0
5,372 - +0.1
5,391 - +0.3
5,401 + +0.4
5,487 + GFF4043 0.13 -2.0
5,492 - GFF4043 0.13 -0.2
5,665 - GFF4043 0.27 -0.1
5,665 - GFF4043 0.27 +0.8
5,665 - GFF4043 0.27 -0.2
5,687 - GFF4043 0.29 -0.5
5,777 - GFF4043 0.36 -0.3
5,777 - GFF4043 0.36 -0.3
5,782 - GFF4043 0.37 -0.4
5,782 - GFF4043 0.37 -0.1
5,849 - GFF4043 0.42 -1.4
5,945 + GFF4043 0.50 -0.4
5,995 + GFF4043 0.54 -0.1
5,996 - GFF4043 0.54 -0.6
6,107 - GFF4043 0.63 -0.2
6,171 - GFF4043 0.69 -2.9
6,218 - GFF4043 0.72 -0.8
6,231 - GFF4043 0.74 -0.7
6,333 - GFF4043 0.82 -0.3
6,356 - GFF4043 0.84 -0.4
6,384 + GFF4043 0.86 -1.2
6,385 - GFF4043 0.86 -0.7
6,385 - GFF4043 0.86 -1.4
6,388 + GFF4043 0.86 -0.4
6,389 - GFF4043 0.86 +0.9
6,389 - GFF4043 0.86 -0.3
6,389 - GFF4043 0.86 -0.3
6,391 - GFF4043 0.87 +0.4
6,411 - GFF4043 0.88 -0.4
6,424 - GFF4043 0.89 -0.7
6,424 - GFF4043 0.89 +0.0
6,431 - GFF4043 0.90 +0.1
6,431 - GFF4043 0.90 +0.3
6,442 - -1.0
6,536 - -0.2
6,681 - +0.1
6,721 - -1.1
6,721 - +0.1
6,763 + -0.7
6,952 - GFF4044 0.24 +0.4
7,017 + GFF4044 0.32 +0.7
7,017 + GFF4044 0.32 +0.5
7,018 - GFF4044 0.33 -1.6
7,022 - GFF4044 0.33 -0.3
7,245 + GFF4044 0.63 -0.1
7,246 - GFF4044 0.63 -0.6
7,401 + GFF4044 0.83 -0.1
7,402 - GFF4044 0.83 -0.2
7,402 - GFF4044 0.83 -0.5
7,513 - +0.8
7,527 + -0.2
7,528 - -0.0
7,530 - -2.5
7,532 + +0.9

Or see this region's nucleotide sequence