Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4026

Experiment: LB_plus_SM_buffer with Br60_phage 0.000005 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4025 and GFF4026 are separated by 71 nucleotidesGFF4026 and GFF4027 overlap by 1 nucleotidesGFF4027 and GFF4028 are separated by 14 nucleotides GFF4025 - Cytoplasmic alpha-amylase (EC 3.2.1.1), at 291,702 to 293,186 GFF4025 GFF4026 - Flagellar biosynthesis protein FliT, at 293,258 to 293,626 GFF4026 GFF4027 - Flagellar biosynthesis protein FliS, at 293,626 to 294,033 GFF4027 GFF4028 - Flagellar hook-associated protein FliD, at 294,048 to 295,451 GFF4028 Position (kb) 293 294Strain fitness (log2 ratio) -2 -1 0 1at 292.270 kb on + strand, within GFF4025at 292.358 kb on - strand, within GFF4025at 292.432 kb on - strand, within GFF4025at 292.452 kb on - strand, within GFF4025at 292.535 kb on - strand, within GFF4025at 292.602 kb on - strand, within GFF4025at 292.646 kb on - strand, within GFF4025at 292.717 kb on + strand, within GFF4025at 292.718 kb on - strand, within GFF4025at 292.718 kb on - strand, within GFF4025at 292.738 kb on + strand, within GFF4025at 293.026 kb on - strand, within GFF4025at 293.356 kb on + strand, within GFF4026at 293.356 kb on + strand, within GFF4026at 293.357 kb on - strand, within GFF4026at 293.588 kb on - strand, within GFF4026at 293.683 kb on - strand, within GFF4027at 293.769 kb on - strand, within GFF4027at 294.063 kb on - strandat 294.090 kb on - strandat 294.450 kb on - strand, within GFF4028at 294.459 kb on - strand, within GFF4028

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Br60_phage 0.000005 MOI
remove
292,270 + GFF4025 0.38 +0.2
292,358 - GFF4025 0.44 -0.5
292,432 - GFF4025 0.49 +0.6
292,452 - GFF4025 0.51 +0.2
292,535 - GFF4025 0.56 +0.5
292,602 - GFF4025 0.61 +0.3
292,646 - GFF4025 0.64 +0.0
292,717 + GFF4025 0.68 +0.5
292,718 - GFF4025 0.68 +0.1
292,718 - GFF4025 0.68 +1.0
292,738 + GFF4025 0.70 +0.1
293,026 - GFF4025 0.89 +1.0
293,356 + GFF4026 0.27 -2.3
293,356 + GFF4026 0.27 -1.3
293,357 - GFF4026 0.27 -0.9
293,588 - GFF4026 0.89 -1.5
293,683 - GFF4027 0.14 -1.5
293,769 - GFF4027 0.35 -1.9
294,063 - -0.6
294,090 - +0.1
294,450 - GFF4028 0.29 +0.4
294,459 - GFF4028 0.29 +0.6

Or see this region's nucleotide sequence