Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3681

Experiment: LB_plus_SM_buffer with Br60_phage 0.000005 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3679 and GFF3680 overlap by 20 nucleotidesGFF3680 and GFF3681 overlap by 1 nucleotidesGFF3681 and GFF3682 are separated by 344 nucleotides GFF3679 - Chromosome partition protein MukF, at 29,802 to 31,124 GFF3679 GFF3680 - Chromosome partition protein MukE, at 31,105 to 31,809 GFF3680 GFF3681 - Chromosome partition protein MukB, at 31,809 to 36,275 GFF3681 GFF3682 - L,D-transpeptidase YcbB, at 36,620 to 38,461 GFF3682 Position (kb) 31 32 33 34 35 36 37Strain fitness (log2 ratio) -1 0 1 2at 36.273 kb on + strandat 36.461 kb on + strandat 36.492 kb on + strandat 36.536 kb on + strandat 36.632 kb on - strandat 36.632 kb on - strandat 36.679 kb on - strandat 36.881 kb on - strand, within GFF3682at 36.890 kb on + strand, within GFF3682at 36.890 kb on + strand, within GFF3682at 37.101 kb on - strand, within GFF3682at 37.146 kb on + strand, within GFF3682at 37.149 kb on - strand, within GFF3682at 37.150 kb on + strand, within GFF3682at 37.150 kb on + strand, within GFF3682at 37.151 kb on - strand, within GFF3682at 37.151 kb on - strand, within GFF3682at 37.151 kb on - strand, within GFF3682at 37.272 kb on - strand, within GFF3682

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Br60_phage 0.000005 MOI
remove
36,273 + -0.2
36,461 + +0.5
36,492 + +0.3
36,536 + +0.1
36,632 - -0.0
36,632 - +0.0
36,679 - +0.8
36,881 - GFF3682 0.14 +0.2
36,890 + GFF3682 0.15 +0.3
36,890 + GFF3682 0.15 +0.3
37,101 - GFF3682 0.26 -0.3
37,146 + GFF3682 0.29 -0.3
37,149 - GFF3682 0.29 +0.2
37,150 + GFF3682 0.29 +0.9
37,150 + GFF3682 0.29 -0.6
37,151 - GFF3682 0.29 +1.8
37,151 - GFF3682 0.29 +0.0
37,151 - GFF3682 0.29 +0.8
37,272 - GFF3682 0.35 +0.6

Or see this region's nucleotide sequence