Experiment: Paraquat dichloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01800 and PS417_01805 are separated by 219 nucleotides PS417_01805 and PS417_01810 are separated by 162 nucleotides
PS417_01800: PS417_01800 - amino acid ABC transporter substrate-binding protein, at 402,032 to 402,832
_01800
PS417_01805: PS417_01805 - amino acid ABC transporter substrate-binding protein, at 403,052 to 403,849
_01805
PS417_01810: PS417_01810 - ABC transporter permease, at 404,012 to 404,971
_01810
Position (kb) 403
404 Strain fitness (log2 ratio) -2
-1
0
1
2 at 402.063 kb on + strand at 402.063 kb on + strand at 402.161 kb on + strand, within PS417_01800 at 402.162 kb on - strand, within PS417_01800 at 402.162 kb on - strand, within PS417_01800 at 402.162 kb on - strand, within PS417_01800 at 402.162 kb on - strand, within PS417_01800 at 402.162 kb on - strand, within PS417_01800 at 402.162 kb on - strand at 402.598 kb on + strand, within PS417_01800 at 402.598 kb on + strand, within PS417_01800 at 402.598 kb on + strand, within PS417_01800 at 402.614 kb on + strand, within PS417_01800 at 402.728 kb on - strand, within PS417_01800 at 402.773 kb on + strand at 402.774 kb on - strand at 402.774 kb on - strand at 402.774 kb on - strand at 402.774 kb on - strand at 402.839 kb on + strand at 402.848 kb on - strand at 402.929 kb on + strand at 402.930 kb on - strand at 402.930 kb on - strand at 402.930 kb on - strand at 403.025 kb on + strand at 403.025 kb on + strand at 403.026 kb on - strand at 403.026 kb on - strand at 403.027 kb on + strand at 403.027 kb on + strand at 403.027 kb on + strand at 403.027 kb on + strand at 403.028 kb on - strand at 403.178 kb on + strand, within PS417_01805 at 403.179 kb on - strand, within PS417_01805 at 403.458 kb on - strand, within PS417_01805 at 403.458 kb on - strand, within PS417_01805 at 403.458 kb on - strand, within PS417_01805 at 403.458 kb on - strand, within PS417_01805 at 403.458 kb on - strand, within PS417_01805 at 403.458 kb on - strand, within PS417_01805 at 403.460 kb on - strand, within PS417_01805 at 403.460 kb on - strand, within PS417_01805 at 403.460 kb on - strand, within PS417_01805 at 403.460 kb on - strand, within PS417_01805 at 403.550 kb on + strand, within PS417_01805 at 403.550 kb on + strand, within PS417_01805 at 403.551 kb on - strand at 403.551 kb on - strand, within PS417_01805 at 403.590 kb on + strand, within PS417_01805 at 403.591 kb on - strand, within PS417_01805 at 403.632 kb on - strand, within PS417_01805 at 403.632 kb on - strand, within PS417_01805 at 403.632 kb on - strand, within PS417_01805 at 403.638 kb on + strand, within PS417_01805 at 403.639 kb on - strand, within PS417_01805 at 403.677 kb on - strand, within PS417_01805 at 403.734 kb on - strand, within PS417_01805 at 403.790 kb on + strand at 404.087 kb on + strand at 404.087 kb on + strand at 404.088 kb on - strand at 404.088 kb on - strand at 404.091 kb on - strand at 404.091 kb on - strand at 404.112 kb on - strand, within PS417_01810 at 404.142 kb on - strand, within PS417_01810 at 404.142 kb on - strand, within PS417_01810 at 404.509 kb on + strand, within PS417_01810 at 404.510 kb on - strand, within PS417_01810 at 404.517 kb on + strand, within PS417_01810 at 404.618 kb on + strand, within PS417_01810 at 404.618 kb on + strand, within PS417_01810 at 404.618 kb on + strand, within PS417_01810 at 404.618 kb on + strand, within PS417_01810 at 404.619 kb on - strand, within PS417_01810 at 404.619 kb on - strand, within PS417_01810 at 404.773 kb on + strand, within PS417_01810 at 404.773 kb on + strand, within PS417_01810 at 404.774 kb on - strand, within PS417_01810 at 404.775 kb on + strand, within PS417_01810 at 404.776 kb on - strand, within PS417_01810
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.002 mg/ml remove 402,063 + +0.8 402,063 + -1.7 402,161 + PS417_01800 0.16 +0.3 402,162 - PS417_01800 0.16 +0.2 402,162 - PS417_01800 0.16 +1.1 402,162 - PS417_01800 0.16 -0.4 402,162 - PS417_01800 0.16 +0.3 402,162 - PS417_01800 0.16 +0.2 402,162 - +1.3 402,598 + PS417_01800 0.71 +0.7 402,598 + PS417_01800 0.71 -0.8 402,598 + PS417_01800 0.71 -1.0 402,614 + PS417_01800 0.73 +0.3 402,728 - PS417_01800 0.87 -0.5 402,773 + +0.2 402,774 - +0.3 402,774 - -0.6 402,774 - +0.2 402,774 - -1.1 402,839 + +1.2 402,848 - +0.5 402,929 + +2.3 402,930 - -1.8 402,930 - +0.1 402,930 - +0.3 403,025 + +0.6 403,025 + -0.4 403,026 - -0.4 403,026 - +0.5 403,027 + +1.1 403,027 + +0.0 403,027 + -0.0 403,027 + -0.4 403,028 - +0.0 403,178 + PS417_01805 0.16 -0.1 403,179 - PS417_01805 0.16 -0.3 403,458 - PS417_01805 0.51 -1.2 403,458 - PS417_01805 0.51 -0.8 403,458 - PS417_01805 0.51 -0.6 403,458 - PS417_01805 0.51 -0.4 403,458 - PS417_01805 0.51 -1.8 403,458 - PS417_01805 0.51 +0.3 403,460 - PS417_01805 0.51 +0.4 403,460 - PS417_01805 0.51 -0.1 403,460 - PS417_01805 0.51 +0.1 403,460 - PS417_01805 0.51 -0.4 403,550 + PS417_01805 0.62 -0.3 403,550 + PS417_01805 0.62 +0.1 403,551 - +0.5 403,551 - PS417_01805 0.63 +0.3 403,590 + PS417_01805 0.67 -0.3 403,591 - PS417_01805 0.68 +0.3 403,632 - PS417_01805 0.73 -0.4 403,632 - PS417_01805 0.73 -0.2 403,632 - PS417_01805 0.73 -1.5 403,638 + PS417_01805 0.73 +0.1 403,639 - PS417_01805 0.74 -0.7 403,677 - PS417_01805 0.78 +0.4 403,734 - PS417_01805 0.85 -2.4 403,790 + -0.3 404,087 + -0.2 404,087 + -0.4 404,088 - +0.7 404,088 - -0.6 404,091 - +0.2 404,091 - -0.3 404,112 - PS417_01810 0.10 +0.4 404,142 - PS417_01810 0.14 -0.7 404,142 - PS417_01810 0.14 +0.1 404,509 + PS417_01810 0.52 +1.9 404,510 - PS417_01810 0.52 +0.8 404,517 + PS417_01810 0.53 -0.9 404,618 + PS417_01810 0.63 -0.5 404,618 + PS417_01810 0.63 -0.3 404,618 + PS417_01810 0.63 -1.2 404,618 + PS417_01810 0.63 +2.3 404,619 - PS417_01810 0.63 -1.0 404,619 - PS417_01810 0.63 +0.1 404,773 + PS417_01810 0.79 -0.6 404,773 + PS417_01810 0.79 +0.1 404,774 - PS417_01810 0.79 -0.7 404,775 + PS417_01810 0.79 -0.3 404,776 - PS417_01810 0.80 -0.5
Or see this region's nucleotide sequence