Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF353

Experiment: LB_plus_SM_buffer with Br60_phage 0.000005 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF351 and GFF352 overlap by 36 nucleotidesGFF352 and GFF353 are separated by 89 nucleotidesGFF353 and GFF354 are separated by 2 nucleotidesGFF354 and GFF355 are separated by 2 nucleotides GFF351 - Xanthine permease, at 70,435 to 71,826 GFF351 GFF352 - FIG01048298: hypothetical protein, at 71,791 to 71,964 GFF352 GFF353 - Sodium/glutamate symport protein, at 72,054 to 73,259 GFF353 GFF354 - putative cytoplasmic protein, at 73,262 to 74,113 GFF354 GFF355 - ATP-dependent DNA helicase RecG (EC 3.6.1.-), at 74,116 to 76,197 GFF355 Position (kb) 72 73 74Strain fitness (log2 ratio) -2 -1 0 1at 71.179 kb on - strand, within GFF351at 71.511 kb on + strand, within GFF351at 71.533 kb on + strand, within GFF351at 71.677 kb on + strand, within GFF351at 71.762 kb on - strandat 71.862 kb on - strand, within GFF352at 72.040 kb on + strandat 72.041 kb on - strandat 72.041 kb on - strandat 72.052 kb on - strandat 72.152 kb on + strandat 72.182 kb on - strand, within GFF353at 72.182 kb on - strand, within GFF353at 72.243 kb on - strand, within GFF353at 72.364 kb on + strand, within GFF353at 72.365 kb on - strand, within GFF353at 72.450 kb on - strand, within GFF353at 72.597 kb on + strand, within GFF353at 72.703 kb on + strand, within GFF353at 72.729 kb on - strand, within GFF353at 72.764 kb on - strand, within GFF353at 72.809 kb on - strand, within GFF353at 72.809 kb on - strand, within GFF353at 72.988 kb on + strand, within GFF353at 73.011 kb on + strand, within GFF353at 73.118 kb on + strand, within GFF353at 73.122 kb on - strand, within GFF353at 73.158 kb on - strandat 73.440 kb on - strand, within GFF354at 73.490 kb on + strand, within GFF354at 73.490 kb on + strand, within GFF354at 73.593 kb on - strand, within GFF354at 73.814 kb on + strand, within GFF354at 73.827 kb on + strand, within GFF354at 73.891 kb on - strand, within GFF354

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Br60_phage 0.000005 MOI
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71,179 - GFF351 0.53 +0.8
71,511 + GFF351 0.77 -0.2
71,533 + GFF351 0.79 +0.1
71,677 + GFF351 0.89 -1.7
71,762 - -2.1
71,862 - GFF352 0.41 +0.1
72,040 + +0.1
72,041 - -0.6
72,041 - +0.2
72,052 - +1.3
72,152 + +0.2
72,182 - GFF353 0.11 -0.4
72,182 - GFF353 0.11 -0.2
72,243 - GFF353 0.16 -0.9
72,364 + GFF353 0.26 -0.2
72,365 - GFF353 0.26 +0.2
72,450 - GFF353 0.33 +0.4
72,597 + GFF353 0.45 +0.1
72,703 + GFF353 0.54 -0.2
72,729 - GFF353 0.56 -0.6
72,764 - GFF353 0.59 -0.1
72,809 - GFF353 0.63 -0.3
72,809 - GFF353 0.63 -0.3
72,988 + GFF353 0.77 -1.0
73,011 + GFF353 0.79 -0.5
73,118 + GFF353 0.88 -0.6
73,122 - GFF353 0.89 -1.7
73,158 - -1.5
73,440 - GFF354 0.21 -0.1
73,490 + GFF354 0.27 -1.8
73,490 + GFF354 0.27 -0.5
73,593 - GFF354 0.39 -1.3
73,814 + GFF354 0.65 +0.2
73,827 + GFF354 0.66 -0.7
73,891 - GFF354 0.74 +0.2

Or see this region's nucleotide sequence