Experiment: Paraquat dichloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00155 and PS417_00160 are separated by 1 nucleotides PS417_00160 and PS417_00165 are separated by 48 nucleotides
PS417_00155: PS417_00155 - 2-dehydro-3-deoxygalactonokinase, at 32,977 to 33,936
_00155
PS417_00160: PS417_00160 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 33,938 to 34,558
_00160
PS417_00165: PS417_00165 - galactonate dehydratase, at 34,607 to 35,755
_00165
Position (kb) 33
34
35 Strain fitness (log2 ratio) -2
-1
0
1
2 at 32.940 kb on + strand at 32.942 kb on + strand at 33.028 kb on + strand at 33.028 kb on + strand at 33.029 kb on - strand at 33.030 kb on + strand at 33.297 kb on + strand, within PS417_00155 at 33.298 kb on - strand, within PS417_00155 at 33.483 kb on + strand, within PS417_00155 at 33.499 kb on - strand, within PS417_00155 at 33.713 kb on - strand, within PS417_00155 at 34.080 kb on - strand at 34.426 kb on + strand, within PS417_00160 at 34.427 kb on - strand, within PS417_00160 at 34.427 kb on - strand, within PS417_00160 at 34.427 kb on - strand, within PS417_00160 at 34.492 kb on + strand, within PS417_00160 at 34.529 kb on + strand at 34.530 kb on - strand at 34.530 kb on - strand at 34.591 kb on - strand at 34.591 kb on - strand at 34.591 kb on - strand at 34.592 kb on + strand at 34.602 kb on - strand at 34.758 kb on - strand, within PS417_00165 at 34.955 kb on + strand, within PS417_00165 at 35.213 kb on + strand, within PS417_00165 at 35.213 kb on + strand, within PS417_00165 at 35.213 kb on + strand, within PS417_00165 at 35.214 kb on - strand, within PS417_00165 at 35.214 kb on - strand, within PS417_00165 at 35.357 kb on + strand, within PS417_00165 at 35.438 kb on + strand, within PS417_00165 at 35.516 kb on + strand, within PS417_00165 at 35.517 kb on - strand, within PS417_00165 at 35.517 kb on - strand, within PS417_00165 at 35.517 kb on - strand, within PS417_00165
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.002 mg/ml remove 32,940 + -0.1 32,942 + +2.1 33,028 + -1.9 33,028 + -0.1 33,029 - -0.4 33,030 + +0.3 33,297 + PS417_00155 0.33 +1.9 33,298 - PS417_00155 0.33 +0.6 33,483 + PS417_00155 0.53 +1.1 33,499 - PS417_00155 0.54 -0.3 33,713 - PS417_00155 0.77 +0.0 34,080 - +0.7 34,426 + PS417_00160 0.79 +0.8 34,427 - PS417_00160 0.79 -0.2 34,427 - PS417_00160 0.79 +0.3 34,427 - PS417_00160 0.79 -1.9 34,492 + PS417_00160 0.89 -1.9 34,529 + -0.3 34,530 - +0.0 34,530 - +0.3 34,591 - -1.1 34,591 - -0.4 34,591 - +0.1 34,592 + +0.1 34,602 - -0.2 34,758 - PS417_00165 0.13 -0.6 34,955 + PS417_00165 0.30 -0.2 35,213 + PS417_00165 0.53 -0.6 35,213 + PS417_00165 0.53 +0.2 35,213 + PS417_00165 0.53 +0.8 35,214 - PS417_00165 0.53 -0.2 35,214 - PS417_00165 0.53 -0.9 35,357 + PS417_00165 0.65 -0.3 35,438 + PS417_00165 0.72 +0.9 35,516 + PS417_00165 0.79 +0.9 35,517 - PS417_00165 0.79 -1.0 35,517 - PS417_00165 0.79 -0.9 35,517 - PS417_00165 0.79 +1.3
Or see this region's nucleotide sequence