Strain Fitness in Pseudomonas simiae WCS417 around PS417_11090
Experiment: Paraquat dichloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Paraquat dichloride 0.002 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 2,376,781 | - | PS417_11085 | 0.51 | +0.4 | |
| 2,376,863 | + | PS417_11085 | 0.55 | -0.1 | |
| 2,376,863 | + | PS417_11085 | 0.55 | -0.7 | |
| 2,376,864 | - | PS417_11085 | 0.55 | +0.1 | |
| 2,376,864 | - | PS417_11085 | 0.55 | -0.1 | |
| 2,377,796 | + | -0.0 | |||
| 2,377,796 | + | -0.3 | |||
| 2,377,797 | - | +0.2 | |||
| 2,377,797 | - | +1.5 | |||
| 2,377,865 | - | PS417_11090 | 0.11 | -0.9 | |
| 2,378,032 | + | PS417_11090 | 0.27 | -0.9 | |
| 2,378,153 | + | PS417_11090 | 0.38 | -0.9 | |
| 2,378,296 | + | PS417_11090 | 0.52 | -0.4 | |
| 2,378,300 | + | PS417_11090 | 0.52 | -0.2 | |
| 2,378,301 | - | PS417_11090 | 0.52 | -1.3 | |
| 2,378,911 | + | +0.3 | |||
| 2,378,961 | - | +0.1 | |||
| 2,379,085 | - | PS417_11095 | 0.11 | -0.1 | |
| 2,379,182 | - | PS417_11095 | 0.20 | +1.5 | |
| 2,379,606 | + | PS417_11095 | 0.59 | +0.3 | |
| 2,379,637 | + | PS417_11095 | 0.61 | +0.5 | |
| 2,379,698 | + | PS417_11095 | 0.67 | +0.3 | |
| 2,379,778 | + | -0.9 | |||
| 2,379,779 | - | PS417_11095 | 0.74 | +0.2 | |
| 2,379,779 | - | PS417_11095 | 0.74 | -0.2 | |
| 2,379,802 | - | PS417_11095 | 0.76 | +0.3 |
Or see this region's nucleotide sequence