Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2014

Experiment: LB_plus_SM_buffer with Br60_phage 0.000005 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2013 and GFF2014 are separated by 114 nucleotidesGFF2014 and GFF2015 are separated by 120 nucleotidesGFF2015 and GFF2016 overlap by 25 nucleotides GFF2013 - Aspartate ammonia-lyase (EC 4.3.1.1), at 24,093 to 25,529 GFF2013 GFF2014 - C4-dicarboxylate transporter DcuA, at 25,644 to 26,945 GFF2014 GFF2015 - Periplasmic divalent cation tolerance protein CutA, at 27,066 to 27,413 GFF2015 GFF2016 - Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8), at 27,389 to 29,092 GFF2016 Position (kb) 25 26 27Strain fitness (log2 ratio) -1 0 1at 24.825 kb on + strand, within GFF2013at 24.921 kb on + strand, within GFF2013at 24.921 kb on + strand, within GFF2013at 24.922 kb on - strand, within GFF2013at 24.922 kb on - strand, within GFF2013at 24.922 kb on - strand, within GFF2013at 25.108 kb on + strand, within GFF2013at 25.116 kb on - strand, within GFF2013at 25.243 kb on - strand, within GFF2013at 25.308 kb on + strand, within GFF2013at 25.309 kb on - strand, within GFF2013at 25.309 kb on - strand, within GFF2013at 25.311 kb on - strand, within GFF2013at 25.457 kb on + strandat 25.492 kb on - strandat 25.493 kb on + strandat 25.494 kb on - strandat 25.499 kb on + strandat 25.506 kb on + strandat 25.509 kb on - strandat 25.541 kb on - strandat 25.544 kb on - strandat 25.582 kb on - strandat 25.643 kb on + strandat 25.648 kb on + strandat 25.648 kb on + strandat 25.649 kb on - strandat 25.830 kb on - strand, within GFF2014at 25.886 kb on + strand, within GFF2014at 25.899 kb on + strand, within GFF2014at 25.899 kb on + strand, within GFF2014at 26.097 kb on + strand, within GFF2014at 26.099 kb on + strand, within GFF2014at 26.100 kb on - strand, within GFF2014at 26.129 kb on + strand, within GFF2014at 26.130 kb on - strand, within GFF2014at 26.134 kb on - strand, within GFF2014at 26.134 kb on - strand, within GFF2014at 26.135 kb on + strand, within GFF2014at 26.136 kb on - strand, within GFF2014at 26.345 kb on + strand, within GFF2014at 26.534 kb on + strand, within GFF2014at 26.534 kb on + strand, within GFF2014at 26.535 kb on - strand, within GFF2014at 26.535 kb on - strand, within GFF2014at 26.540 kb on + strand, within GFF2014at 26.540 kb on + strand, within GFF2014at 26.541 kb on - strand, within GFF2014at 26.676 kb on + strand, within GFF2014at 26.793 kb on + strand, within GFF2014at 26.816 kb on - strandat 26.936 kb on + strandat 26.937 kb on - strandat 26.937 kb on - strandat 26.944 kb on - strandat 26.966 kb on - strandat 27.019 kb on + strandat 27.020 kb on - strandat 27.020 kb on - strandat 27.021 kb on + strandat 27.065 kb on + strandat 27.223 kb on - strand, within GFF2015at 27.252 kb on + strand, within GFF2015at 27.253 kb on - strand, within GFF2015at 27.375 kb on - strand, within GFF2015at 27.381 kb on + strandat 27.382 kb on - strandat 27.382 kb on - strandat 27.407 kb on - strandat 27.563 kb on + strand, within GFF2016at 27.564 kb on - strand, within GFF2016at 27.564 kb on - strand, within GFF2016at 27.699 kb on + strand, within GFF2016at 27.743 kb on + strand, within GFF2016at 27.744 kb on - strand, within GFF2016at 27.744 kb on - strand, within GFF2016at 27.886 kb on - strand, within GFF2016at 27.922 kb on - strand, within GFF2016

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Br60_phage 0.000005 MOI
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24,825 + GFF2013 0.51 +1.1
24,921 + GFF2013 0.58 -0.8
24,921 + GFF2013 0.58 +0.2
24,922 - GFF2013 0.58 -0.0
24,922 - GFF2013 0.58 -0.4
24,922 - GFF2013 0.58 +0.0
25,108 + GFF2013 0.71 +0.1
25,116 - GFF2013 0.71 +0.1
25,243 - GFF2013 0.80 +0.4
25,308 + GFF2013 0.85 +0.1
25,309 - GFF2013 0.85 +0.4
25,309 - GFF2013 0.85 -0.5
25,311 - GFF2013 0.85 +0.7
25,457 + +0.2
25,492 - -0.7
25,493 + +0.6
25,494 - +0.3
25,499 + -0.2
25,506 + +0.3
25,509 - -0.8
25,541 - +0.4
25,544 - -1.1
25,582 - -0.2
25,643 + -0.3
25,648 + +0.6
25,648 + -1.1
25,649 - -0.3
25,830 - GFF2014 0.14 +0.1
25,886 + GFF2014 0.19 +0.2
25,899 + GFF2014 0.20 +0.1
25,899 + GFF2014 0.20 +0.2
26,097 + GFF2014 0.35 -0.8
26,099 + GFF2014 0.35 +0.2
26,100 - GFF2014 0.35 -0.8
26,129 + GFF2014 0.37 -0.3
26,130 - GFF2014 0.37 +0.6
26,134 - GFF2014 0.38 -0.2
26,134 - GFF2014 0.38 +0.2
26,135 + GFF2014 0.38 +0.2
26,136 - GFF2014 0.38 +0.4
26,345 + GFF2014 0.54 +0.8
26,534 + GFF2014 0.68 +0.4
26,534 + GFF2014 0.68 -0.2
26,535 - GFF2014 0.68 -0.1
26,535 - GFF2014 0.68 +0.1
26,540 + GFF2014 0.69 +0.5
26,540 + GFF2014 0.69 +0.1
26,541 - GFF2014 0.69 -0.4
26,676 + GFF2014 0.79 -0.0
26,793 + GFF2014 0.88 +0.2
26,816 - -0.7
26,936 + -0.2
26,937 - -0.0
26,937 - -0.1
26,944 - +0.2
26,966 - +0.0
27,019 + -0.1
27,020 - +0.7
27,020 - +0.3
27,021 + +0.1
27,065 + +0.2
27,223 - GFF2015 0.45 +0.1
27,252 + GFF2015 0.53 +0.5
27,253 - GFF2015 0.54 +0.3
27,375 - GFF2015 0.89 +0.1
27,381 + -0.1
27,382 - -0.3
27,382 - +0.1
27,407 - +0.7
27,563 + GFF2016 0.10 -0.6
27,564 - GFF2016 0.10 -0.1
27,564 - GFF2016 0.10 +0.2
27,699 + GFF2016 0.18 +0.6
27,743 + GFF2016 0.21 +0.2
27,744 - GFF2016 0.21 +0.1
27,744 - GFF2016 0.21 +0.1
27,886 - GFF2016 0.29 +0.7
27,922 - GFF2016 0.31 +0.5

Or see this region's nucleotide sequence