Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1209

Experiment: LB_plus_SM_buffer with Br60_phage 0.000005 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1205 and GFF1206 overlap by 22 nucleotidesGFF1206 and GFF1207 overlap by 16 nucleotidesGFF1207 and GFF1208 are separated by 361 nucleotidesGFF1208 and GFF1209 are separated by 10 nucleotidesGFF1209 and GFF1210 are separated by 240 nucleotidesGFF1210 and GFF1211 are separated by 14 nucleotides GFF1205 - hypothetical protein, at 47,670 to 47,813 GFF1205 GFF1206 - Putative GerE-family regulatory protein, at 47,792 to 48,142 GFF1206 GFF1207 - Probable regulatory protein, at 48,127 to 48,285 GFF1207 GFF1208 - hypothetical protein, at 48,647 to 48,760 GFF1208 GFF1209 - putative outer membrane protein, at 48,771 to 49,658 GFF1209 GFF1210 - Kappa-fimbriae probable subunit, at 49,899 to 50,456 GFF1210 GFF1211 - Kappa-fimbriae chaperone protein, at 50,471 to 51,163 GFF1211 Position (kb) 48 49 50Strain fitness (log2 ratio) -1 0 1 2 3at 47.860 kb on - strand, within GFF1206at 48.001 kb on + strand, within GFF1206at 48.065 kb on - strand, within GFF1206at 48.088 kb on - strand, within GFF1206at 48.092 kb on + strand, within GFF1206at 48.142 kb on + strandat 48.210 kb on - strand, within GFF1207at 48.229 kb on - strand, within GFF1207at 48.229 kb on - strand, within GFF1207at 48.229 kb on - strand, within GFF1207at 48.439 kb on - strandat 48.521 kb on + strandat 48.587 kb on - strandat 48.598 kb on - strandat 48.629 kb on + strandat 48.645 kb on + strandat 48.666 kb on + strand, within GFF1208at 48.689 kb on + strand, within GFF1208at 48.731 kb on + strand, within GFF1208at 48.765 kb on + strandat 48.790 kb on - strandat 48.812 kb on + strandat 48.813 kb on - strandat 48.825 kb on + strandat 48.852 kb on - strandat 48.948 kb on + strand, within GFF1209at 48.978 kb on - strand, within GFF1209at 48.984 kb on + strand, within GFF1209at 48.985 kb on - strand, within GFF1209at 48.988 kb on - strand, within GFF1209at 49.012 kb on - strand, within GFF1209at 49.012 kb on - strand, within GFF1209at 49.053 kb on - strand, within GFF1209at 49.055 kb on + strand, within GFF1209at 49.068 kb on - strand, within GFF1209at 49.095 kb on + strand, within GFF1209at 49.095 kb on + strand, within GFF1209at 49.095 kb on + strand, within GFF1209at 49.096 kb on - strand, within GFF1209at 49.096 kb on - strand, within GFF1209at 49.112 kb on + strand, within GFF1209at 49.114 kb on + strand, within GFF1209at 49.159 kb on - strand, within GFF1209at 49.159 kb on - strand, within GFF1209at 49.211 kb on - strand, within GFF1209at 49.211 kb on - strand, within GFF1209at 49.212 kb on + strand, within GFF1209at 49.212 kb on + strand, within GFF1209at 49.213 kb on - strand, within GFF1209at 49.213 kb on - strand, within GFF1209at 49.213 kb on - strand, within GFF1209at 49.213 kb on - strand, within GFF1209at 49.213 kb on - strand, within GFF1209at 49.213 kb on - strand, within GFF1209at 49.213 kb on - strand, within GFF1209at 49.213 kb on - strand, within GFF1209at 49.213 kb on - strand, within GFF1209at 49.213 kb on - strand, within GFF1209at 49.265 kb on + strand, within GFF1209at 49.265 kb on + strand, within GFF1209at 49.266 kb on - strand, within GFF1209at 49.266 kb on - strand, within GFF1209at 49.281 kb on + strand, within GFF1209at 49.281 kb on + strand, within GFF1209at 49.281 kb on + strand, within GFF1209at 49.282 kb on - strand, within GFF1209at 49.282 kb on - strand, within GFF1209at 49.282 kb on - strand, within GFF1209at 49.283 kb on + strand, within GFF1209at 49.283 kb on + strand, within GFF1209at 49.284 kb on - strand, within GFF1209at 49.284 kb on - strand, within GFF1209at 49.284 kb on - strand, within GFF1209at 49.284 kb on - strand, within GFF1209at 49.285 kb on + strand, within GFF1209at 49.286 kb on - strand, within GFF1209at 49.404 kb on + strand, within GFF1209at 49.404 kb on + strand, within GFF1209at 49.404 kb on + strand, within GFF1209at 49.412 kb on + strand, within GFF1209at 49.412 kb on + strand, within GFF1209at 49.412 kb on + strand, within GFF1209at 49.413 kb on - strand, within GFF1209at 49.413 kb on - strand, within GFF1209at 49.477 kb on - strand, within GFF1209at 49.482 kb on - strand, within GFF1209at 49.512 kb on - strand, within GFF1209at 49.517 kb on + strand, within GFF1209at 49.540 kb on + strand, within GFF1209at 49.540 kb on + strand, within GFF1209at 49.553 kb on + strand, within GFF1209at 49.553 kb on + strand, within GFF1209at 49.554 kb on - strand, within GFF1209at 49.555 kb on + strand, within GFF1209at 49.555 kb on + strand, within GFF1209at 49.556 kb on - strand, within GFF1209at 49.556 kb on - strand, within GFF1209at 49.556 kb on - strand, within GFF1209at 49.563 kb on + strand, within GFF1209at 49.564 kb on - strand, within GFF1209at 49.642 kb on - strandat 49.672 kb on + strandat 49.679 kb on + strandat 49.679 kb on + strandat 49.680 kb on - strandat 49.683 kb on + strandat 49.683 kb on + strandat 49.683 kb on + strandat 49.683 kb on + strandat 49.684 kb on - strandat 49.704 kb on - strandat 49.715 kb on + strandat 49.723 kb on + strandat 49.724 kb on - strandat 49.724 kb on - strandat 49.728 kb on + strandat 49.729 kb on - strandat 49.740 kb on + strandat 49.793 kb on + strandat 49.852 kb on + strandat 49.859 kb on + strandat 50.010 kb on + strand, within GFF1210at 50.054 kb on + strand, within GFF1210at 50.055 kb on - strand, within GFF1210at 50.122 kb on - strand, within GFF1210at 50.192 kb on + strand, within GFF1210at 50.193 kb on - strand, within GFF1210at 50.269 kb on + strand, within GFF1210at 50.270 kb on - strand, within GFF1210at 50.279 kb on + strand, within GFF1210at 50.280 kb on - strand, within GFF1210at 50.283 kb on - strand, within GFF1210at 50.349 kb on - strand, within GFF1210at 50.485 kb on - strandat 50.485 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Br60_phage 0.000005 MOI
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47,860 - GFF1206 0.19 -0.0
48,001 + GFF1206 0.60 -0.9
48,065 - GFF1206 0.78 -1.1
48,088 - GFF1206 0.84 +0.3
48,092 + GFF1206 0.85 +1.1
48,142 + +0.7
48,210 - GFF1207 0.52 +1.2
48,229 - GFF1207 0.64 +0.4
48,229 - GFF1207 0.64 -0.1
48,229 - GFF1207 0.64 +0.9
48,439 - -0.0
48,521 + +0.0
48,587 - +0.7
48,598 - +1.0
48,629 + -0.3
48,645 + +1.8
48,666 + GFF1208 0.17 +0.6
48,689 + GFF1208 0.37 +0.1
48,731 + GFF1208 0.74 +0.7
48,765 + -0.0
48,790 - -0.3
48,812 + +0.2
48,813 - +0.7
48,825 + -0.2
48,852 - -1.0
48,948 + GFF1209 0.20 +1.0
48,978 - GFF1209 0.23 -1.0
48,984 + GFF1209 0.24 +0.5
48,985 - GFF1209 0.24 -1.2
48,988 - GFF1209 0.24 -0.1
49,012 - GFF1209 0.27 +0.3
49,012 - GFF1209 0.27 -1.4
49,053 - GFF1209 0.32 +0.1
49,055 + GFF1209 0.32 +1.2
49,068 - GFF1209 0.33 +0.2
49,095 + GFF1209 0.36 +0.0
49,095 + GFF1209 0.36 -1.2
49,095 + GFF1209 0.36 +0.1
49,096 - GFF1209 0.37 -0.2
49,096 - GFF1209 0.37 +0.1
49,112 + GFF1209 0.38 +0.7
49,114 + GFF1209 0.39 +0.4
49,159 - GFF1209 0.44 +0.5
49,159 - GFF1209 0.44 +0.2
49,211 - GFF1209 0.50 +0.0
49,211 - GFF1209 0.50 +1.6
49,212 + GFF1209 0.50 -0.1
49,212 + GFF1209 0.50 +0.3
49,213 - GFF1209 0.50 +0.7
49,213 - GFF1209 0.50 +0.3
49,213 - GFF1209 0.50 +0.4
49,213 - GFF1209 0.50 +0.0
49,213 - GFF1209 0.50 +0.2
49,213 - GFF1209 0.50 -0.1
49,213 - GFF1209 0.50 -0.1
49,213 - GFF1209 0.50 +0.4
49,213 - GFF1209 0.50 +0.3
49,213 - GFF1209 0.50 +0.0
49,265 + GFF1209 0.56 +0.1
49,265 + GFF1209 0.56 +0.2
49,266 - GFF1209 0.56 -0.2
49,266 - GFF1209 0.56 +0.5
49,281 + GFF1209 0.57 -0.0
49,281 + GFF1209 0.57 +0.6
49,281 + GFF1209 0.57 +0.4
49,282 - GFF1209 0.58 +0.1
49,282 - GFF1209 0.58 +0.1
49,282 - GFF1209 0.58 -0.1
49,283 + GFF1209 0.58 -0.4
49,283 + GFF1209 0.58 +3.7
49,284 - GFF1209 0.58 +1.1
49,284 - GFF1209 0.58 -0.0
49,284 - GFF1209 0.58 +0.3
49,284 - GFF1209 0.58 +0.5
49,285 + GFF1209 0.58 +0.2
49,286 - GFF1209 0.58 -0.4
49,404 + GFF1209 0.71 -0.0
49,404 + GFF1209 0.71 +0.4
49,404 + GFF1209 0.71 -0.5
49,412 + GFF1209 0.72 +0.4
49,412 + GFF1209 0.72 -0.9
49,412 + GFF1209 0.72 +0.4
49,413 - GFF1209 0.72 +0.0
49,413 - GFF1209 0.72 -0.0
49,477 - GFF1209 0.80 +0.2
49,482 - GFF1209 0.80 +1.7
49,512 - GFF1209 0.83 +0.6
49,517 + GFF1209 0.84 -0.3
49,540 + GFF1209 0.87 +0.2
49,540 + GFF1209 0.87 +0.1
49,553 + GFF1209 0.88 +0.1
49,553 + GFF1209 0.88 +0.2
49,554 - GFF1209 0.88 +1.8
49,555 + GFF1209 0.88 -0.2
49,555 + GFF1209 0.88 -0.3
49,556 - GFF1209 0.88 -0.5
49,556 - GFF1209 0.88 +0.2
49,556 - GFF1209 0.88 +0.4
49,563 + GFF1209 0.89 +0.1
49,564 - GFF1209 0.89 +0.6
49,642 - -0.7
49,672 + -0.3
49,679 + +0.6
49,679 + +0.9
49,680 - +0.2
49,683 + +1.1
49,683 + +0.1
49,683 + -0.9
49,683 + -0.4
49,684 - +0.3
49,704 - +0.6
49,715 + +0.0
49,723 + -0.5
49,724 - -0.2
49,724 - +0.2
49,728 + -0.1
49,729 - +0.1
49,740 + +1.7
49,793 + -0.2
49,852 + +0.1
49,859 + -0.5
50,010 + GFF1210 0.20 +0.2
50,054 + GFF1210 0.28 +0.2
50,055 - GFF1210 0.28 -0.3
50,122 - GFF1210 0.40 +0.0
50,192 + GFF1210 0.53 +0.1
50,193 - GFF1210 0.53 +0.4
50,269 + GFF1210 0.66 -0.2
50,270 - GFF1210 0.66 -0.9
50,279 + GFF1210 0.68 +0.3
50,280 - GFF1210 0.68 +0.5
50,283 - GFF1210 0.69 +0.6
50,349 - GFF1210 0.81 -0.1
50,485 - +1.3
50,485 - +0.1

Or see this region's nucleotide sequence