Strain Fitness in Escherichia coli BW25113 around b3929

Experiment: capsaicin 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	capsaicin 1 mM
4,115,886	+	glpF	b3927	0.73	-0.8
4,115,889	+	glpF	b3927	0.73	+0.3
4,115,893	-	glpF	b3927	0.74	-1.5
4,115,953	+	glpF	b3927	0.81	+0.1
4,115,956	+	glpF	b3927	0.81	+1.3
4,115,956	+	glpF	b3927	0.81	-0.2
4,115,960	+	glpF	b3927	0.82	-0.4
4,115,960	+	glpF	b3927	0.82	+0.5
4,115,964	-	glpF	b3927	0.82	-0.4
4,115,966	+	glpF	b3927	0.83	+0.0
4,115,968	-	glpF	b3927	0.83	+0.7
4,116,014	+	glpF	b3927	0.88	-0.2
4,116,023	+	glpF	b3927	0.89	-1.0
4,116,023	+	glpF	b3927	0.89	-0.1
4,116,027	+	glpF	b3927	0.90	+0.0
4,116,036	-				-0.8
4,116,056	+				+0.3
4,116,081	+				+0.2
4,116,101	+				+0.1
4,116,101	+				+0.4
4,116,103	+				+0.3
4,116,138	-				-0.1
4,116,148	+				-0.1
4,116,171	+				-1.4
4,116,174	+				-0.5
4,116,175	+				+0.3
4,116,176	+				+0.3
4,116,193	-				+0.4
4,116,236	+				+0.2
4,116,236	+				-0.4
4,116,236	-				-0.4
4,116,236	-				-0.2
4,116,241	-				+0.7
4,116,241	-				+0.7
4,116,289	+				-1.4
4,116,289	+				+0.3
4,116,292	+				+0.5
4,116,293	-				-0.5
4,116,355	-				-0.6
4,116,360	-				-0.3
4,116,381	+				+0.5
4,116,398	+				-2.1
4,116,415	+				+0.1
4,116,415	+				+0.0
4,116,415	+				+1.2
4,116,418	-				+0.0
4,116,420	+				-0.5
4,116,459	-				-0.9
4,116,528	-				+0.2
4,116,533	-				+0.2
4,116,534	+				+0.5
4,116,535	+				+0.3
4,116,542	-				+0.2
4,116,543	-				+0.5
4,116,543	-				+0.8
4,116,548	+				-0.3
4,116,548	+				+0.1
4,116,548	+				+0.1
4,116,564	-	yiiU	b3928	0.11	+0.4
4,116,580	+	yiiU	b3928	0.17	-0.7
4,116,592	+	yiiU	b3928	0.22	+0.9
4,116,597	+	yiiU	b3928	0.24	-0.3
4,116,599	+	yiiU	b3928	0.25	+0.0
4,116,599	+	yiiU	b3928	0.25	-0.9
4,116,603	-	yiiU	b3928	0.26	+0.3
4,116,607	+	yiiU	b3928	0.28	+0.5
4,116,647	+	yiiU	b3928	0.44	+1.0
4,116,647	+	yiiU	b3928	0.44	-0.4
4,116,654	+	yiiU	b3928	0.47	-0.1
4,116,683	+	yiiU	b3928	0.59	+0.1
4,116,686	-	yiiU	b3928	0.60	+0.2
4,116,686	-	yiiU	b3928	0.60	-0.9
4,116,691	+	yiiU	b3928	0.62	+0.8
4,116,691	+	yiiU	b3928	0.62	+1.2
4,116,748	+	yiiU	b3928	0.85	+0.2
4,116,767	+				+0.1
4,116,767	+				+0.1
4,116,767	+				+0.0
4,116,775	-				+0.0
4,116,782	+				-0.5
4,116,782	+				-0.1
4,116,785	-				+0.4
4,116,789	-				+0.6
4,116,789	-				+1.1
4,116,816	+				-0.1
4,116,816	+				-0.0
4,116,816	+				-0.6
4,116,824	-				-0.3
4,116,824	-				+0.6
4,116,824	-				-0.9
4,116,824	-				-0.8
4,116,824	-				+0.6
4,116,858	+				+0.0
4,116,883	-				-0.4
4,116,883	-				-0.8
4,116,930	+	rraA	b3929	0.13	-0.2
4,116,930	+	rraA	b3929	0.13	+1.2
4,116,932	-	rraA	b3929	0.13	+0.7
4,116,932	-	rraA	b3929	0.13	-0.2
4,116,940	+	rraA	b3929	0.15	-0.6
4,116,960	-	rraA	b3929	0.19	+0.6
4,117,029	-	rraA	b3929	0.33	+0.7
4,117,029	-	rraA	b3929	0.33	+0.4
4,117,039	-	rraA	b3929	0.35	+0.8
4,117,050	-	rraA	b3929	0.37	+0.2
4,117,083	-	rraA	b3929	0.44	+0.3
4,117,083	-	rraA	b3929	0.44	+1.0
4,117,125	-	rraA	b3929	0.53	-0.6
4,117,125	-	rraA	b3929	0.53	+0.4
4,117,130	-	rraA	b3929	0.54	+0.3
4,117,130	-	rraA	b3929	0.54	-0.1
4,117,130	-	rraA	b3929	0.54	-0.0
4,117,130	-	rraA	b3929	0.54	-1.3
4,117,140	-	rraA	b3929	0.56	-0.1
4,117,140	-	rraA	b3929	0.56	+0.1
4,117,180	+	rraA	b3929	0.64	-0.2
4,117,218	-	rraA	b3929	0.72	-0.0
4,117,218	-	rraA	b3929	0.72	+0.7
4,117,227	-	rraA	b3929	0.74	+1.4
4,117,227	-	rraA	b3929	0.74	-0.4
4,117,241	-	rraA	b3929	0.77	-0.6
4,117,243	+	rraA	b3929	0.77	+0.1
4,117,313	+				+1.7
4,117,313	+				+0.0
4,117,313	+				+1.0
4,117,313	+				-1.0
4,117,313	+				+0.8
4,117,330	-				-0.4
4,117,369	-				+0.5
4,117,399	+				+0.3
4,117,399	-				+0.5
4,117,399	-				+1.0
4,117,514	-				+0.1
4,117,516	+				+0.3
4,117,516	+				-0.3
4,117,538	+				+0.8
4,117,538	+				+1.1
4,117,547	+	menA	b3930	0.11	+0.4
4,117,547	+	menA	b3930	0.11	+0.5
4,117,575	-	menA	b3930	0.14	-0.6
4,117,575	-	menA	b3930	0.14	+0.3
4,117,616	+	menA	b3930	0.18	-0.1
4,117,622	-	menA	b3930	0.19	-0.1
4,117,624	-	menA	b3930	0.19	+1.0
4,117,634	-	menA	b3930	0.20	-0.3
4,117,634	-	menA	b3930	0.20	-1.0
4,117,647	-	menA	b3930	0.22	+0.4
4,117,647	-	menA	b3930	0.22	-0.9
4,117,654	+	menA	b3930	0.22	+0.1
4,117,668	-	menA	b3930	0.24	+0.1
4,117,701	-	menA	b3930	0.28	-1.0
4,117,701	-	menA	b3930	0.28	+0.1
4,117,773	+	menA	b3930	0.35	-0.3
4,117,777	-	menA	b3930	0.36	+0.0
4,117,792	-	menA	b3930	0.37	-1.8
4,117,792	-	menA	b3930	0.37	+0.9
4,117,794	+	menA	b3930	0.38	-0.6
4,117,829	+	menA	b3930	0.41	-0.2
4,117,829	+	menA	b3930	0.41	-0.0
4,117,837	-	menA	b3930	0.42	+0.5
4,117,837	-	menA	b3930	0.42	+0.4
4,117,837	-	menA	b3930	0.42	+0.7
4,117,837	-	menA	b3930	0.42	+0.2
4,117,841	+	menA	b3930	0.43	+0.2
4,117,841	+	menA	b3930	0.43	-0.4
4,117,853	+	menA	b3930	0.44	+0.2
4,117,856	-	menA	b3930	0.44	+0.6
4,117,861	-	menA	b3930	0.45	+0.1
4,117,866	+	menA	b3930	0.45	+0.1
4,117,873	+	menA	b3930	0.46	+0.2
4,117,901	+	menA	b3930	0.49	-0.1
4,117,909	-	menA	b3930	0.50	-0.2
4,117,920	+	menA	b3930	0.51	+0.2
4,117,928	-	menA	b3930	0.52	+0.1
4,117,928	-	menA	b3930	0.52	-0.0
4,117,928	-	menA	b3930	0.52	+0.0
4,117,929	-	menA	b3930	0.52	-0.4
4,117,935	-	menA	b3930	0.53	-0.1
4,117,948	+	menA	b3930	0.54	-0.4
4,117,948	+	menA	b3930	0.54	+0.4
4,117,948	+	menA	b3930	0.54	+0.1
4,117,953	+	menA	b3930	0.55	-0.0
4,117,956	-	menA	b3930	0.55	-0.1
4,117,956	-	menA	b3930	0.55	+0.0
4,118,020	-	menA	b3930	0.62	-0.4
4,118,020	-	menA	b3930	0.62	-1.1
4,118,020	-	menA	b3930	0.62	-1.7
4,118,020	-	menA	b3930	0.62	-0.1
4,118,034	-	menA	b3930	0.63	+0.4
4,118,044	-	menA	b3930	0.65	-0.1
4,118,044	-	menA	b3930	0.65	+0.3
4,118,049	-	menA	b3930	0.65	+0.3
4,118,049	-	menA	b3930	0.65	-0.1
4,118,055	+	menA	b3930	0.66	+0.6
4,118,055	+	menA	b3930	0.66	+0.5
4,118,063	-	menA	b3930	0.67	+0.1
4,118,063	-	menA	b3930	0.67	+0.5
4,118,068	+	menA	b3930	0.67	+0.1
4,118,068	+	menA	b3930	0.67	-0.0
4,118,091	-	menA	b3930	0.70	+0.1
4,118,109	-	menA	b3930	0.72	-0.0
4,118,130	-	menA	b3930	0.74	-0.7
4,118,130	-	menA	b3930	0.74	-0.6
4,118,132	+	menA	b3930	0.74	-0.1
4,118,146	+	menA	b3930	0.76	+0.7
4,118,190	+	menA	b3930	0.80	-0.7
4,118,190	+	menA	b3930	0.80	+0.0
4,118,190	-	menA	b3930	0.80	+0.5
4,118,190	-	menA	b3930	0.80	+0.1
4,118,197	-	menA	b3930	0.81	+0.1
4,118,197	-	menA	b3930	0.81	+1.7
4,118,202	+	menA	b3930	0.82	+0.9
4,118,204	+	menA	b3930	0.82	-0.1
4,118,208	-	menA	b3930	0.82	+0.6
4,118,212	-	menA	b3930	0.83	+0.1
4,118,223	-	menA	b3930	0.84	-0.1
4,118,263	+	menA	b3930	0.88	+0.0
4,118,265	-	menA	b3930	0.88	+0.1
4,118,268	+	menA	b3930	0.89	+0.4
4,118,268	+	menA	b3930	0.89	+0.9
4,118,269	-	menA	b3930	0.89	+0.7
4,118,269	-	menA	b3930	0.89	+0.3
4,118,271	-	menA	b3930	0.89	-0.3
4,118,292	-				-0.1
4,118,329	+				+0.9