Experiment: LB_plus_SM_buffer with Br60_phage 0.00005 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF568 and GFF569 are separated by 123 nucleotides GFF569 and GFF570 are separated by 171 nucleotides GFF570 and GFF571 are separated by 177 nucleotides GFF571 and GFF572 overlap by 4 nucleotides
GFF568 - FIG00553873: hypothetical protein, at 297,930 to 298,967
GFF568
GFF569 - Qercetin 2,3-dioxygenase, at 299,091 to 299,786
GFF569
GFF570 - Gluconate utilization system Gnt-I transcriptional repressor, at 299,958 to 300,911
GFF570
GFF571 - Gluconokinase (EC 2.7.1.12), at 301,089 to 301,583
GFF571
GFF572 - Low-affinity gluconate/H+ symporter GntU, at 301,580 to 302,920
GFF572
Position (kb) 299
300
301 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 299.030 kb on + strand at 299.059 kb on + strand at 299.097 kb on + strand at 299.289 kb on + strand, within GFF569 at 299.289 kb on + strand, within GFF569 at 299.289 kb on + strand, within GFF569 at 299.289 kb on + strand, within GFF569 at 299.290 kb on - strand, within GFF569 at 299.290 kb on - strand, within GFF569 at 299.290 kb on - strand, within GFF569 at 299.294 kb on - strand, within GFF569 at 299.653 kb on + strand, within GFF569 at 299.654 kb on - strand, within GFF569 at 299.654 kb on - strand, within GFF569 at 299.804 kb on + strand at 299.892 kb on - strand at 299.901 kb on - strand at 299.901 kb on - strand at 299.903 kb on - strand at 300.217 kb on - strand, within GFF570 at 300.495 kb on - strand, within GFF570 at 300.495 kb on - strand, within GFF570 at 300.495 kb on - strand, within GFF570 at 300.497 kb on + strand, within GFF570 at 300.498 kb on - strand, within GFF570 at 300.498 kb on - strand, within GFF570 at 300.516 kb on + strand, within GFF570 at 300.517 kb on - strand, within GFF570 at 300.552 kb on + strand, within GFF570 at 300.552 kb on + strand, within GFF570 at 300.553 kb on - strand, within GFF570 at 300.553 kb on - strand, within GFF570 at 300.641 kb on + strand, within GFF570 at 300.878 kb on - strand at 300.928 kb on + strand at 300.929 kb on - strand at 301.033 kb on + strand at 301.191 kb on - strand, within GFF571 at 301.191 kb on - strand, within GFF571 at 301.246 kb on + strand, within GFF571 at 301.247 kb on - strand, within GFF571 at 301.565 kb on + strand at 301.575 kb on - strand at 301.886 kb on + strand, within GFF572 at 301.887 kb on - strand, within GFF572
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Br60_phage 0.00005 MOI remove 299,030 + +0.2 299,059 + +0.0 299,097 + +0.2 299,289 + GFF569 0.28 +0.2 299,289 + GFF569 0.28 -0.2 299,289 + GFF569 0.28 +0.4 299,289 + GFF569 0.28 -0.3 299,290 - GFF569 0.29 +0.1 299,290 - GFF569 0.29 -0.4 299,290 - GFF569 0.29 +0.5 299,294 - GFF569 0.29 +0.3 299,653 + GFF569 0.81 +0.4 299,654 - GFF569 0.81 -0.2 299,654 - GFF569 0.81 +0.3 299,804 + +0.5 299,892 - -0.8 299,901 - +0.1 299,901 - -0.8 299,903 - -0.4 300,217 - GFF570 0.27 -0.2 300,495 - GFF570 0.56 -2.4 300,495 - GFF570 0.56 -0.8 300,495 - GFF570 0.56 -0.6 300,497 + GFF570 0.56 -0.5 300,498 - GFF570 0.57 -0.1 300,498 - GFF570 0.57 -0.9 300,516 + GFF570 0.58 +0.4 300,517 - GFF570 0.59 -2.8 300,552 + GFF570 0.62 -0.5 300,552 + GFF570 0.62 -0.7 300,553 - GFF570 0.62 -0.2 300,553 - GFF570 0.62 -0.7 300,641 + GFF570 0.72 -0.3 300,878 - -0.3 300,928 + -0.2 300,929 - +0.1 301,033 + +0.1 301,191 - GFF571 0.21 -0.5 301,191 - GFF571 0.21 -0.0 301,246 + GFF571 0.32 +1.2 301,247 - GFF571 0.32 -0.1 301,565 + +0.2 301,575 - +0.0 301,886 + GFF572 0.23 +0.6 301,887 - GFF572 0.23 +0.3
Or see this region's nucleotide sequence