Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4895

Experiment: LB_plus_SM_buffer with Br60_phage 0.00005 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4894 and GFF4895 are separated by 142 nucleotidesGFF4895 and GFF4896 are separated by 9 nucleotides GFF4894 - Cell division protein FtsK, at 11,636 to 15,670 GFF4894 GFF4895 - Outer membrane lipoprotein carrier protein LolA, at 15,813 to 16,424 GFF4895 GFF4896 - FIG065221: Holliday junction DNA helicase, at 16,434 to 17,777 GFF4896 Position (kb) 15 16 17Strain fitness (log2 ratio) -1 0 1at 15.677 kb on - strandat 16.418 kb on + strandat 16.467 kb on - strandat 16.515 kb on + strandat 16.516 kb on - strandat 16.952 kb on - strand, within GFF4896at 17.200 kb on - strand, within GFF4896at 17.219 kb on - strand, within GFF4896at 17.222 kb on + strand, within GFF4896at 17.222 kb on + strand, within GFF4896at 17.223 kb on - strand, within GFF4896at 17.260 kb on - strand, within GFF4896

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Br60_phage 0.00005 MOI
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15,677 - +0.4
16,418 + -0.0
16,467 - -1.4
16,515 + +0.1
16,516 - -0.3
16,952 - GFF4896 0.39 +0.2
17,200 - GFF4896 0.57 -0.4
17,219 - GFF4896 0.58 -0.6
17,222 + GFF4896 0.59 +0.6
17,222 + GFF4896 0.59 -0.2
17,223 - GFF4896 0.59 -0.0
17,260 - GFF4896 0.61 +0.2

Or see this region's nucleotide sequence