Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4733

Experiment: LB_plus_SM_buffer with Br60_phage 0.00005 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4732 and GFF4733 are separated by 384 nucleotidesGFF4733 and GFF4734 are separated by 344 nucleotidesGFF4734 and GFF4735 are separated by 86 nucleotides GFF4732 - SPI1-associated transcriptional regulator SprB, at 40,750 to 41,505 GFF4732 GFF4733 - Type III secretion transcriptional regulator HilC (= SirC), at 41,890 to 42,777 GFF4733 GFF4734 - Putative effector protein OrgC of SPI-1 type III secretion system, at 43,122 to 43,484 GFF4734 GFF4735 - OrgB protein, associated with InvC ATPase of type III secretion system, at 43,571 to 44,251 GFF4735 Position (kb) 41 42 43Strain fitness (log2 ratio) -1 0 1at 41.098 kb on - strand, within GFF4732at 41.748 kb on - strandat 41.784 kb on - strandat 41.787 kb on + strandat 41.787 kb on + strandat 42.284 kb on + strand, within GFF4733at 43.026 kb on + strandat 43.070 kb on + strandat 43.081 kb on - strandat 43.082 kb on + strandat 43.085 kb on - strandat 43.085 kb on - strandat 43.097 kb on - strandat 43.365 kb on - strand, within GFF4734at 43.476 kb on - strandat 43.546 kb on + strandat 43.547 kb on - strandat 43.616 kb on - strandat 43.682 kb on - strand, within GFF4735at 43.754 kb on - strand, within GFF4735

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Br60_phage 0.00005 MOI
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41,098 - GFF4732 0.46 +0.0
41,748 - +1.4
41,784 - +0.3
41,787 + +0.0
41,787 + +0.1
42,284 + GFF4733 0.44 -0.9
43,026 + +1.4
43,070 + -0.5
43,081 - -0.1
43,082 + -0.1
43,085 - -0.6
43,085 - +0.3
43,097 - +0.0
43,365 - GFF4734 0.67 +0.2
43,476 - +0.4
43,546 + -0.2
43,547 - +0.6
43,616 - +1.0
43,682 - GFF4735 0.16 +0.5
43,754 - GFF4735 0.27 -0.2

Or see this region's nucleotide sequence