Experiment: LB_plus_SM_buffer with Br60_phage 0.00005 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3440 and GFF3441 overlap by 1 nucleotides GFF3441 and GFF3442 overlap by 11 nucleotides GFF3442 and GFF3443 overlap by 7 nucleotides GFF3443 and GFF3444 overlap by 7 nucleotides
GFF3440 - Nickel ABC transporter, periplasmic nickel-binding protein nikA2 (TC 3.A.1.5.3), at 201,175 to 202,809
GFF3440
GFF3441 - Nickel transport system permease protein nikB2 (TC 3.A.1.5.3), at 202,809 to 203,783
GFF3441
GFF3442 - Nickel transport system permease protein nikC2 (TC 3.A.1.5.3), at 203,773 to 204,585
GFF3442
GFF3443 - Nickel transport ATP-binding protein nikD2 (TC 3.A.1.5.3), at 204,579 to 205,376
GFF3443
GFF3444 - Nickel transport ATP-binding protein nikE2 (TC 3.A.1.5.3), at 205,370 to 205,960
GFF3444
Position (kb) 203
204
205 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 202.886 kb on + strand at 202.920 kb on - strand, within GFF3441 at 203.227 kb on + strand, within GFF3441 at 203.228 kb on - strand, within GFF3441 at 203.297 kb on - strand, within GFF3441 at 203.384 kb on - strand, within GFF3441 at 203.392 kb on + strand, within GFF3441 at 203.393 kb on - strand, within GFF3441 at 203.510 kb on - strand, within GFF3441 at 203.524 kb on + strand, within GFF3441 at 203.524 kb on + strand, within GFF3441 at 203.524 kb on + strand, within GFF3441 at 203.524 kb on + strand, within GFF3441 at 203.525 kb on - strand, within GFF3441 at 203.554 kb on + strand, within GFF3441 at 203.689 kb on + strand at 203.701 kb on + strand at 203.701 kb on + strand at 203.702 kb on - strand at 203.705 kb on - strand at 203.705 kb on - strand at 203.821 kb on - strand at 203.951 kb on + strand, within GFF3442 at 204.293 kb on - strand, within GFF3442 at 204.491 kb on + strand, within GFF3442 at 204.503 kb on + strand, within GFF3442 at 204.655 kb on + strand at 204.788 kb on + strand, within GFF3443 at 204.818 kb on + strand, within GFF3443 at 204.818 kb on + strand, within GFF3443 at 204.819 kb on - strand, within GFF3443 at 204.819 kb on - strand, within GFF3443 at 204.849 kb on - strand, within GFF3443 at 204.965 kb on - strand, within GFF3443 at 204.968 kb on - strand, within GFF3443 at 205.077 kb on + strand, within GFF3443 at 205.077 kb on + strand, within GFF3443 at 205.078 kb on - strand, within GFF3443 at 205.080 kb on - strand, within GFF3443 at 205.245 kb on + strand, within GFF3443 at 205.246 kb on - strand, within GFF3443 at 205.246 kb on - strand, within GFF3443 at 205.248 kb on - strand, within GFF3443 at 205.334 kb on - strand at 205.366 kb on + strand at 205.366 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Br60_phage 0.00005 MOI remove 202,886 + +1.2 202,920 - GFF3441 0.11 -0.0 203,227 + GFF3441 0.43 +0.1 203,228 - GFF3441 0.43 +1.1 203,297 - GFF3441 0.50 +0.3 203,384 - GFF3441 0.59 -0.4 203,392 + GFF3441 0.60 +0.3 203,393 - GFF3441 0.60 -0.3 203,510 - GFF3441 0.72 -0.0 203,524 + GFF3441 0.73 +0.3 203,524 + GFF3441 0.73 +3.8 203,524 + GFF3441 0.73 +0.8 203,524 + GFF3441 0.73 +0.2 203,525 - GFF3441 0.73 -0.1 203,554 + GFF3441 0.76 +0.3 203,689 + +0.1 203,701 + +0.3 203,701 + -0.0 203,702 - -0.1 203,705 - +0.1 203,705 - +0.2 203,821 - -1.0 203,951 + GFF3442 0.22 +0.2 204,293 - GFF3442 0.64 +0.1 204,491 + GFF3442 0.88 +0.6 204,503 + GFF3442 0.90 +1.0 204,655 + +0.6 204,788 + GFF3443 0.26 -0.4 204,818 + GFF3443 0.30 +0.4 204,818 + GFF3443 0.30 +1.1 204,819 - GFF3443 0.30 +1.0 204,819 - GFF3443 0.30 +0.9 204,849 - GFF3443 0.34 +1.2 204,965 - GFF3443 0.48 +0.1 204,968 - GFF3443 0.49 -0.2 205,077 + GFF3443 0.62 +0.4 205,077 + GFF3443 0.62 +0.7 205,078 - GFF3443 0.63 -0.8 205,080 - GFF3443 0.63 -0.0 205,245 + GFF3443 0.83 +0.3 205,246 - GFF3443 0.84 +0.6 205,246 - GFF3443 0.84 +0.5 205,248 - GFF3443 0.84 +0.4 205,334 - -1.2 205,366 + -0.1 205,366 + +0.3
Or see this region's nucleotide sequence