Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2867

Experiment: LB_plus_SM_buffer with Br60_phage 0.00005 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2865 and GFF2866 are separated by 162 nucleotidesGFF2866 and GFF2867 are separated by 485 nucleotidesGFF2867 and GFF2868 are separated by 96 nucleotidesGFF2868 and GFF2869 are separated by 392 nucleotides GFF2865 - Mobile element protein, at 382,126 to 382,983 GFF2865 GFF2866 - Phage integrase, at 383,146 to 383,475 GFF2866 GFF2867 - hypothetical protein, at 383,961 to 384,161 GFF2867 GFF2868 - hypothetical protein, at 384,258 to 384,386 GFF2868 GFF2869 - Permease of the drug/metabolite transporter (DMT) superfamily, at 384,779 to 385,693 GFF2869 Position (kb) 383 384 385Strain fitness (log2 ratio) -2 -1 0 1at 383.083 kb on + strandat 383.084 kb on - strandat 383.410 kb on - strand, within GFF2866at 383.410 kb on - strand, within GFF2866at 383.876 kb on - strandat 383.934 kb on + strandat 383.958 kb on + strandat 384.005 kb on + strand, within GFF2867at 384.053 kb on + strand, within GFF2867at 384.053 kb on + strand, within GFF2867at 384.144 kb on - strandat 384.315 kb on + strand, within GFF2868at 384.377 kb on + strandat 384.404 kb on - strandat 384.575 kb on + strandat 385.085 kb on - strand, within GFF2869

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Br60_phage 0.00005 MOI
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383,083 + -0.4
383,084 - +0.6
383,410 - GFF2866 0.80 +0.1
383,410 - GFF2866 0.80 +0.8
383,876 - -0.2
383,934 + -0.3
383,958 + -0.3
384,005 + GFF2867 0.22 +1.7
384,053 + GFF2867 0.46 +0.5
384,053 + GFF2867 0.46 +0.6
384,144 - -2.0
384,315 + GFF2868 0.44 +0.2
384,377 + -0.1
384,404 - +0.3
384,575 + -0.5
385,085 - GFF2869 0.33 -0.1

Or see this region's nucleotide sequence