Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF146

Experiment: LB_plus_SM_buffer with Br60_phage 0.00005 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF144 and GFF145 overlap by 4 nucleotidesGFF145 and GFF146 are separated by 1 nucleotidesGFF146 and GFF147 overlap by 8 nucleotides GFF144 - Cell division protein FtsA, at 133,468 to 134,730 GFF144 GFF145 - Cell division protein FtsQ, at 134,727 to 135,557 GFF145 GFF146 - D-alanine--D-alanine ligase (EC 6.3.2.4), at 135,559 to 136,479 GFF146 GFF147 - UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8), at 136,472 to 137,947 GFF147 Position (kb) 135 136 137Strain fitness (log2 ratio) -2 -1 0 1at 135.664 kb on - strand, within GFF146at 135.664 kb on - strand, within GFF146at 135.737 kb on - strand, within GFF146at 136.391 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Br60_phage 0.00005 MOI
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135,664 - GFF146 0.11 -0.2
135,664 - GFF146 0.11 -1.7
135,737 - GFF146 0.19 -0.6
136,391 - -2.2

Or see this region's nucleotide sequence