Strain Fitness in Agrobacterium fabrum C58 around Atu8020

Experiment: R2A with Ceftazidime 4 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Ceftazidime 4 mM
1,761,239	+		Atu1776	0.43	-0.2
1,761,321	-		Atu1776	0.54	-0.2
1,761,340	+		Atu1776	0.56	-0.0
1,761,349	+		Atu1776	0.57	+0.2
1,761,364	-		Atu1776	0.59	+0.5
1,761,418	+		Atu1776	0.66	+0.2
1,761,435	+		Atu1776	0.68	-0.1
1,761,578	+		Atu1776	0.86	+0.5
1,761,668	+				+0.3
1,761,715	-				+0.0
1,761,772	-				+0.1
1,761,850	+		Atu1777	0.28	+0.7
1,761,871	-		Atu1777	0.34	-0.4
1,761,926	-		Atu1777	0.50	-1.5
1,761,968	-		Atu1777	0.62	-1.5
1,762,135	-				+1.3
1,762,146	+				+0.5
1,762,184	-				+1.4
1,762,205	+				-0.3
1,762,221	+				-0.2
1,762,274	+		Atu8020	0.27	-0.2
1,762,282	-		Atu8020	0.30	-1.1
1,762,435	+		Atu8020	0.85	+0.1
1,762,443	-		Atu8020	0.88	-0.0
1,762,522	+				+0.5
1,762,587	+				-0.6
1,762,702	+				-0.4
1,762,761	-				-0.5
1,762,775	-				+0.4
1,762,885	-		Atu1778	0.11	+1.2
1,762,958	+		Atu1778	0.13	-1.6
1,763,108	-		Atu1778	0.18	-0.4
1,763,108	-		Atu1778	0.18	+0.7
1,763,137	+		Atu1778	0.18	-0.3
1,763,181	-		Atu1778	0.20	+0.4
1,763,195	+		Atu1778	0.20	-0.6
1,763,203	-		Atu1778	0.20	-0.0
1,763,203	-		Atu1778	0.20	-0.2
1,763,247	-		Atu1778	0.22	-0.5
1,763,274	+		Atu1778	0.22	-1.2
1,763,282	-		Atu1778	0.23	-0.4
1,763,285	+		Atu1778	0.23	-0.1
1,763,337	-		Atu1778	0.24	-2.5
1,763,459	-		Atu1778	0.28	-0.4