Strain Fitness in Agrobacterium fabrum C58 around Atu4651

Experiment: R2A with Ceftazidime 4 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Ceftazidime 4 mM
1,803,856	+		Atu4650	0.14	+0.2
1,803,919	+		Atu4650	0.20	+0.1
1,803,972	+		Atu4650	0.25	-0.0
1,804,095	-		Atu4650	0.37	-0.7
1,804,251	+		Atu4650	0.52	+0.5
1,804,310	+		Atu4650	0.57	-0.2
1,804,358	-		Atu4650	0.62	-0.3
1,804,382	+		Atu4650	0.64	-0.1
1,804,543	-		Atu4650	0.80	-0.1
1,804,685	+				-0.5
1,804,685	+				+0.1
1,804,686	+				+0.2
1,804,692	+				+0.2
1,804,693	-				+3.0
1,804,693	-				+0.3
1,804,694	-				+0.1
1,804,694	-				-0.0
1,804,764	+				-0.1
1,804,792	+				-0.1
1,804,936	+		Atu4651	0.13	-0.1
1,805,106	-		Atu4651	0.26	-0.8
1,805,118	-		Atu4651	0.27	+0.6
1,805,185	+		Atu4651	0.31	-0.5
1,805,193	-		Atu4651	0.32	-0.3
1,805,193	-		Atu4651	0.32	+0.4
1,805,196	+		Atu4651	0.32	-0.1
1,805,196	+		Atu4651	0.32	-0.1
1,805,204	-		Atu4651	0.33	-0.6
1,805,204	-		Atu4651	0.33	-0.6
1,805,263	-		Atu4651	0.37	-0.2
1,805,334	-		Atu4651	0.42	-1.8
1,805,345	-		Atu4651	0.43	+0.1
1,805,397	-		Atu4651	0.47	+0.1
1,805,629	-		Atu4651	0.64	-0.1
1,805,647	-		Atu4651	0.65	+0.3
1,805,648	+		Atu4651	0.65	-0.0
1,805,648	+		Atu4651	0.65	-0.6
1,805,765	+		Atu4651	0.74	-0.4
1,805,768	-		Atu4651	0.74	+0.4
1,805,846	-		Atu4651	0.80	-0.3
1,805,877	+		Atu4651	0.82	+0.2
1,805,903	-		Atu4651	0.84	-1.0
1,805,937	+		Atu4651	0.86	-1.2
1,805,937	+		Atu4651	0.86	-0.8
1,805,945	-		Atu4651	0.87	-1.5
1,805,999	+				-0.1
1,806,028	-				+0.8
1,806,042	+				-0.3
1,806,125	+				+0.5
1,806,130	+				-0.3
1,806,133	-				-0.2
1,806,155	+				+0.4
1,806,265	-				-0.1
1,806,293	+				+0.3
1,806,341	+				+0.6
1,806,349	-				-1.1
1,806,411	+		Atu4652	0.16	-0.0
1,806,432	+		Atu4652	0.19	+0.0
1,806,433	+		Atu4652	0.19	+1.1
1,806,433	+		Atu4652	0.19	-0.1
1,806,441	-		Atu4652	0.20	-0.0
1,806,441	-		Atu4652	0.20	-0.2
1,806,471	+		Atu4652	0.23	+1.0
1,806,479	-		Atu4652	0.24	+0.4
1,806,479	-		Atu4652	0.24	-0.5
1,806,479	-		Atu4652	0.24	+0.6
1,806,506	-		Atu4652	0.28	+0.0
1,806,556	-		Atu4652	0.34	-0.1
1,806,592	+		Atu4652	0.38	-0.2
1,806,726	-		Atu4652	0.54	-0.9
1,806,727	+		Atu4652	0.54	-0.7
1,806,815	+		Atu4652	0.64	+0.1
1,806,815	+		Atu4652	0.64	-0.0
1,806,815	+		Atu4652	0.64	-0.3
1,806,823	-		Atu4652	0.65	+0.2
1,806,823	-		Atu4652	0.65	-0.5
1,806,858	+		Atu4652	0.69	-0.1
1,806,875	+		Atu4652	0.71	-0.8
1,806,902	-		Atu4652	0.75	-1.0
1,806,907	-		Atu4652	0.75	-0.8
1,806,958	+		Atu4652	0.81	-1.9
1,806,975	-		Atu4652	0.83	+1.5
1,807,034	+				+0.3
1,807,044	+				+0.6