Strain Fitness in Agrobacterium fabrum C58 around Atu4465

Experiment: R2A with Ceftazidime 4 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Ceftazidime 4 mM
1,607,610	+				+0.4
1,607,637	-				+0.2
1,607,701	+				-0.4
1,607,831	+				-1.0
1,607,844	+		Atu4465	0.11	+0.1
1,607,929	+		Atu4465	0.22	+1.6
1,608,116	-		Atu4465	0.46	-0.2
1,608,140	+		Atu4465	0.50	-0.4
1,608,212	+		Atu4465	0.59	-1.6
1,608,242	+		Atu4465	0.63	-0.1
1,608,260	+		Atu4465	0.65	+0.4
1,608,356	-		Atu4465	0.78	-0.4
1,608,371	+		Atu4465	0.80	-0.1
1,608,438	-		Atu4465	0.88	+0.6
1,608,452	+				+0.2
1,608,460	-				-0.2
1,608,470	+				-0.3
1,608,532	-				+0.1
1,608,584	+				-0.2
1,608,591	+				+0.2
1,608,591	+				+0.1
1,608,599	-				-0.7
1,608,741	-				-0.4
1,608,949	+		Atu4466	0.31	+1.9
1,608,957	-		Atu4466	0.32	+1.1
1,608,959	-		Atu4466	0.32	+0.1
1,609,086	+		Atu4466	0.49	+0.6
1,609,128	+		Atu4466	0.55	-0.8
1,609,238	-		Atu4466	0.70	+0.7
1,609,349	+		Atu4466	0.85	+0.8
1,609,383	-				+1.3