Strain Fitness in Agrobacterium fabrum C58 around Atu4262

Experiment: R2A with Ceftazidime 4 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Ceftazidime 4 mM
1,387,237	+		Atu4260	0.79	-0.1
1,387,284	+		Atu4260	0.85	-1.4
1,387,284	+		Atu4260	0.85	+1.7
1,387,292	-		Atu4260	0.86	+0.2
1,387,292	-		Atu4260	0.86	-0.1
1,387,292	-		Atu4260	0.86	-1.0
1,387,305	-		Atu4260	0.87	+0.2
1,387,396	-				-1.1
1,387,396	-				+0.1
1,387,400	+				+0.0
1,387,413	+				+0.4
1,387,432	+				-0.6
1,387,436	-				+0.9
1,387,626	+		Atu4261	0.29	-0.4
1,387,645	-		Atu4261	0.31	+0.1
1,387,681	-		Atu4261	0.35	+0.1
1,387,751	+		Atu4261	0.44	-0.3
1,387,759	-		Atu4261	0.45	-0.7
1,387,759	-		Atu4261	0.45	-1.2
1,387,759	-		Atu4261	0.45	-0.5
1,387,766	+		Atu4261	0.46	+0.4
1,387,766	+		Atu4261	0.46	+0.1
1,387,771	-		Atu4261	0.46	-0.0
1,387,774	-		Atu4261	0.47	-0.1
1,387,832	+		Atu4261	0.54	+0.0
1,387,834	-		Atu4261	0.54	+0.2
1,387,851	-		Atu4261	0.56	-0.3
1,387,877	-		Atu4261	0.59	+0.4
1,387,956	-		Atu4261	0.69	-0.3
1,387,957	+		Atu4261	0.69	+0.4
1,388,000	+		Atu4261	0.74	-0.3
1,388,008	-		Atu4261	0.75	+0.4
1,388,008	-		Atu4261	0.75	-0.0
1,388,008	-		Atu4261	0.75	+0.8
1,388,021	+		Atu4261	0.77	-0.8
1,388,021	+		Atu4261	0.77	-0.1
1,388,029	-		Atu4261	0.78	-0.3
1,388,032	+		Atu4261	0.78	+0.1
1,388,084	-		Atu4261	0.84	+0.2
1,388,093	+		Atu4261	0.86	+0.0
1,388,096	-		Atu4261	0.86	+0.5
1,388,096	-		Atu4261	0.86	-0.1
1,388,357	+		Atu4262	0.15	-0.2
1,388,405	+		Atu4262	0.20	+1.1
1,388,405	+		Atu4262	0.20	+0.3
1,388,475	+		Atu4262	0.27	+0.3
1,388,480	+		Atu4262	0.28	+1.2
1,388,488	-		Atu4262	0.29	-1.2
1,388,499	+		Atu4262	0.30	-0.0
1,388,537	+		Atu4262	0.34	-0.8
1,388,543	+		Atu4262	0.35	-0.0
1,388,543	+		Atu4262	0.35	+0.1
1,388,545	-		Atu4262	0.35	-1.2
1,388,556	-		Atu4262	0.36	+0.7
1,388,587	+		Atu4262	0.39	+0.7
1,388,590	+		Atu4262	0.40	+0.5
1,388,633	+		Atu4262	0.44	+0.7
1,388,696	+		Atu4262	0.51	+0.6
1,388,696	+		Atu4262	0.51	+2.3
1,388,781	+		Atu4262	0.60	+0.3
1,388,781	+		Atu4262	0.60	+0.4
1,388,863	-		Atu4262	0.69	-0.2
1,388,935	+		Atu4262	0.77	-0.0
1,388,936	-		Atu4262	0.77	+0.5
1,389,060	-				+0.2
1,389,066	+				+0.5
1,389,066	+				+1.1
1,389,129	+				-0.5
1,389,190	+				+0.2
1,389,200	+				+0.4
1,389,234	-				-0.4
1,389,315	-				-0.4
1,389,343	-				+0.2
1,389,361	-				-0.5
1,389,415	+		Atu4263	0.13	+0.1
1,389,423	-		Atu4263	0.14	+1.0
1,389,511	-		Atu4263	0.22	+0.9
1,389,713	-		Atu4263	0.41	-0.2
1,389,715	+		Atu4263	0.41	-0.1
1,389,777	+		Atu4263	0.46	+0.0
1,389,777	+		Atu4263	0.46	+0.6
1,389,785	-		Atu4263	0.47	+1.0
1,389,796	+		Atu4263	0.48	+1.0
1,389,832	-		Atu4263	0.51	-0.1
1,389,888	-		Atu4263	0.56	+0.6
1,389,960	-		Atu4263	0.63	-0.2
1,389,989	+		Atu4263	0.66	-0.0
1,390,097	+		Atu4263	0.76	+0.5
1,390,105	-		Atu4263	0.76	-0.1
1,390,105	-		Atu4263	0.76	-0.6