Strain Fitness in Agrobacterium fabrum C58 around Atu4111

Experiment: R2A with Ceftazidime 4 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Ceftazidime 4 mM
1,229,246	+		Atu4109	0.76	-0.0
1,229,333	+		Atu4109	0.88	+0.8
1,229,439	+				-0.1
1,229,472	-				+0.9
1,229,652	-		Atu4110	0.30	-0.4
1,229,652	-		Atu4110	0.30	-0.2
1,229,654	+		Atu4110	0.30	+0.1
1,229,680	+		Atu4110	0.34	-0.4
1,229,734	+		Atu4110	0.41	-0.4
1,229,768	-		Atu4110	0.45	-0.1
1,229,775	-		Atu4110	0.46	+0.6
1,229,778	-		Atu4110	0.47	-0.2
1,229,803	-		Atu4110	0.50	-0.0
1,229,849	-		Atu4110	0.56	+0.0
1,229,865	+		Atu4110	0.58	+0.5
1,229,865	+		Atu4110	0.58	+0.0
1,229,865	+		Atu4110	0.58	-0.1
1,229,873	-		Atu4110	0.59	+0.3
1,229,914	+		Atu4110	0.65	-0.4
1,229,995	-		Atu4110	0.76	+0.1
1,230,012	+		Atu4110	0.78	-0.1
1,230,115	+				+0.6
1,230,479	+				-0.9
1,230,590	+				+0.4
1,230,618	+				-0.2
1,230,631	-				+0.4
1,230,631	-				-0.4
1,230,631	-				-0.1
1,230,637	-				-0.4
1,230,737	-				-0.8
1,230,815	-				-0.3
1,230,882	-		Atu4112	0.14	-0.1
1,230,920	+		Atu4112	0.17	+0.7
1,230,920	+		Atu4112	0.17	-0.1
1,230,946	+		Atu4112	0.19	-0.7
1,230,965	-		Atu4112	0.21	+0.4
1,231,131	+		Atu4112	0.35	-0.1
1,231,131	+		Atu4112	0.35	+0.7
1,231,195	+		Atu4112	0.40	-0.1
1,231,195	+		Atu4112	0.40	+0.9
1,231,195	+		Atu4112	0.40	+0.7
1,231,222	+		Atu4112	0.42	+0.8
1,231,296	-		Atu4112	0.49	+0.0
1,231,397	+		Atu4112	0.57	+0.1
1,231,405	-		Atu4112	0.58	-0.0
1,231,431	+		Atu4112	0.60	+0.1
1,231,486	-		Atu4112	0.65	+0.2